# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 1.58e-13 1m65A 245 1.01e-11 c.6.3.1 84847 2anuA 255 5.75e-11 c.6.3.1 127058 2yxoA 267 9.01e-11 1v77A 212 1.92e-05 c.6.3.2 108402 2qahA 303 0.3787 1j6oA 268 0.5442 c.1.9.12 77088 2gzxA 265 0.7476 1o12A 376 1.278 b.92.1.5,c.1.9.10 80758,80759 2icsA 379 1.729 b.92.1.8,c.1.9.14 137241,137242 1vflA 356 1.745 c.1.9.1 120041 1yixA 265 2.005 c.1.9.12 123371 1zzmA 259 2.086 c.1.9.12 125911 2pgfA 371 2.099 2gokA 429 2.262 2ffiA 288 3.271 c.1.9.15 133385 3c86A 328 3.431 1xwyA 264 4.339 c.1.9.12 122411 2q09A 416 4.689 1bf6A 291 5.179 c.1.9.3 29065 2fb2A 340 6.781 1ybqB 390 7.096 2ob3A 330 7.305 2pg3A 232 8.833 2z00A 426 8.883 2amxA 376 8.908 c.1.9.1 127024 1tv8A 340 9.99 c.1.28.3 107352 1yw1A 442 10.13 c.1.16.4 124130 1yx1A 264 10.79 c.1.15.7 124169 3be7A 408 11.09 1o0yA 260 11.10 c.1.10.1 80756 2g3fA 421 11.65 2qpxA 376 13.12 1xrtA 467 13.85 b.92.1.3,c.1.9.6 122258,122259 1qtwA 285 13.90 c.1.15.1 29392 3cjpA 272 14.24 1i0dA 332 15.16 c.1.9.3 61487 1cb0A 283 15.51 c.56.2.1 33790 2q02A 272 15.53 1gkrA 458 15.80 b.92.1.3,c.1.9.6 70251,70252 1yrrA 382 16.28 b.92.1.5,c.1.9.10 123935,123936 3ciwA 348 17.29 2puzA 419 17.83 1a0cA 438 18.79 c.1.15.3 29529 1lqaA 346 19.88 c.1.7.1 84674 1ra0A 430 20.52 b.92.1.2,c.1.9.5 111756,111757 1b8oA 284 21.14 c.56.2.1 33762 1vc4A 254 21.59 c.1.2.4 100557 3canA 182 22.57 2f6kA 307 23.25 c.1.9.15 133047 2vc7A 314 23.28 2qs8A 418 24.98 1f6yA 262 26.29 c.1.21.2 29673 2hk0A 309 26.84 2nw0A 189 30.71 2gwnA 452 30.89 1k77A 260 33.32 c.1.15.5 72096 2r8wA 332 33.37 1ny1A 240 35.21 c.6.2.3 86395 1i60A 278 37.87 c.1.15.4 71118 2hqbA 296 38.48 2qw5A 335 39.08 1yxyA 234 40.75 c.1.2.5 124203 2a8yA 270 41.54 1jq5A 370 42.36 e.22.1.2 67084 2zbwA 335 43.20 1e8cA 498 43.46 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1n7kA 234 44.30 c.1.10.1 85374 3bofA 566 45.19 1je0A 236 45.91 c.56.2.1 66581 1a53 247 46.10 3c4vA 426 47.21 1kkoA 413 47.51 c.1.11.2,d.54.1.1 68675,68676 1p1mA 406 48.23 b.92.1.4,c.1.9.9 87696,87697 1pyfA 312 48.62 c.1.7.1 95334 1z82A 335 49.70 2a0nA 265 50.74 c.1.2.1 125961 1j96A 323 51.04 c.1.7.1 71616 1fxxA 482 51.63 c.55.3.5 33726 3b9oA 440 51.75 2q0sA 216 52.00 3c8nA 356 53.47 2qt3A 403 53.65 2h3hA 313 54.02 2douA 376 54.10 1tvlA 454 54.39 c.1.16.4 107366 1a0dA 440 54.63 c.1.15.3 29533 2r8rA 228 56.06 1v4vA 376 58.16 c.87.1.3 100313 1xhcA 367 58.24 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1rhcA 330 58.77 c.1.16.3 97468 2nliA 368 60.00 2r8cA 426 60.22 1hw6A 278 61.12 c.1.7.1 61296 2b81A 323 61.82 2pa6A 427 62.01 2e7fA 262 63.45 2hmcA 344 63.76 1frb 315 64.65 2egzA 219 65.06 1kczA 413 65.65 c.1.11.2,d.54.1.1 68451,68452 1ivnA 190 66.48 c.23.10.5 83719 1q7zA 566 68.91 c.1.21.2,c.1.26.1 96090,96091 1qopA 268 68.95 c.1.2.4 28570 2nlyA 245 69.19 c.6.2.7 138364 1thfD 253 69.30 c.1.2.1 28535 1uehA 253 70.02 c.101.1.1 99259 2ojpA 292 71.39 2qjjA 402 71.86 3beoA 375 72.43 1muwA 386 72.58 c.1.15.3 79495 2i7gA 376 73.99 3cgvA 397 74.07 1f07A 321 75.17 c.1.16.3 59560 1onwA 390 75.24 b.92.1.7,c.1.9.13 87172,87173 2v3aA 384 77.44 2bneA 241 78.18 c.73.1.3 128824 2dri 271 78.22 1vzwA 244 78.52 c.1.2.1 120553 1gox 370 79.03 2ac7A 235 79.15 c.56.2.1 126543 2pgwA 384 81.08 2z06A 252 81.49 2gekA 406 82.01 1gg4A 452 82.04 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2nuhA 118 82.26 1kqpA 271 82.36 c.26.2.1 72883 2og9A 393 82.38 2qulA 290 83.15 2dztA 248 84.01 1oltA 457 84.05 c.1.28.2 93334 1kbjA 412 86.47 c.1.4.1 72280 2rdxA 379 87.28 2vhlA 396 87.53 1g67A 225 88.10 c.1.3.1 60311 1jxhA 288 88.18 c.72.1.2 67415 2g0wA 296 89.93 c.1.15.4 134503