# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 1.74e-14 1m65A 245 2.34e-12 c.6.3.1 84847 2yxoA 267 2.62e-11 2anuA 255 4.65e-11 c.6.3.1 127058 1v77A 212 2.76e-05 c.6.3.2 108402 2qahA 303 0.8764 1vflA 356 0.9812 c.1.9.1 120041 2pgfA 371 1.193 1o12A 376 1.348 b.92.1.5,c.1.9.10 80758,80759 2ffiA 288 1.510 c.1.9.15 133385 1j6oA 268 1.513 c.1.9.12 77088 2gokA 429 1.579 1bf6A 291 2.692 c.1.9.3 29065 2gzxA 265 3.336 2icsA 379 4.554 b.92.1.8,c.1.9.14 137241,137242 3be7A 408 4.814 1yixA 265 5.114 c.1.9.12 123371 3c86A 328 5.575 2z00A 426 5.636 1xwyA 264 5.934 c.1.9.12 122411 2q09A 416 6.345 1zzmA 259 6.525 c.1.9.12 125911 2fb2A 340 6.666 2ob3A 330 6.897 1tv8A 340 8.015 c.1.28.3 107352 1lqaA 346 8.617 c.1.7.1 84674 2q02A 272 8.625 1qtwA 285 9.108 c.1.15.1 29392 2amxA 376 9.159 c.1.9.1 127024 1xrtA 467 9.229 b.92.1.3,c.1.9.6 122258,122259 1gkrA 458 11.49 b.92.1.3,c.1.9.6 70251,70252 1o0yA 260 11.50 c.1.10.1 80756 1ybqB 390 12.08 1k77A 260 12.20 c.1.15.5 72096 2g3fA 421 13.30 1yx1A 264 13.45 c.1.15.7 124169 3ciwA 348 14.72 2qw5A 335 14.97 2vc7A 314 15.19 2hk0A 309 15.28 2f6kA 307 15.42 c.1.9.15 133047 1yw1A 442 17.88 c.1.16.4 124130 2qpxA 376 17.90 1vc4A 254 18.58 c.1.2.4 100557 1b8oA 284 18.83 c.56.2.1 33762 1yrrA 382 19.11 b.92.1.5,c.1.9.10 123935,123936 1i0dA 332 20.23 c.1.9.3 61487 1p1mA 406 21.24 b.92.1.4,c.1.9.9 87696,87697 1q7zA 566 21.93 c.1.21.2,c.1.26.1 96090,96091 1n7kA 234 23.11 c.1.10.1 85374 2hqbA 296 23.38 3cjpA 272 24.46 1cb0A 283 25.29 c.56.2.1 33790 2qs8A 418 25.97 1ny1A 240 26.82 c.6.2.3 86395 1ra0A 430 27.46 b.92.1.2,c.1.9.5 111756,111757 1muwA 386 27.98 c.1.15.3 79495 1f07A 321 28.10 c.1.16.3 59560 2pg3A 232 29.13 3canA 182 29.18 3bofA 566 30.58 2egzA 219 31.41 3b9oA 440 31.67 2j6vA 301 32.95 1a0cA 438 33.14 c.1.15.3 29529 2qulA 290 33.98 2puzA 419 34.67 2gwnA 452 37.50 2vesA 299 39.47 3c8nA 356 39.90 1a0dA 440 41.29 c.1.15.3 29533 1f6yA 262 41.42 c.1.21.2 29673 1rhcA 330 44.17 c.1.16.3 97468 1z82A 335 44.35 1oltA 457 44.93 c.1.28.2 93334 1uehA 253 47.45 c.101.1.1 99259 1yxyA 234 48.50 c.1.2.5 124203 1e0tA 470 48.66 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2qt3A 403 50.49 1fxxA 482 51.60 c.55.3.5 33726 1rd5A 262 53.20 c.1.2.4 111772 1pyfA 312 53.42 c.1.7.1 95334 2a0nA 265 53.47 c.1.2.1 125961 3cumA 302 54.17 2qv5A 261 54.58 1nsjA 205 54.63 c.1.2.4 28560 2bvcA 486 54.93 d.15.9.1,d.128.1.1 129243,129244 1lucA 355 55.52 c.1.16.1 29547 1vjoA 393 56.30 c.67.1.3 100827 1i60A 278 56.95 c.1.15.4 71118 1w8sA 263 57.19 c.1.10.1 120744 1thfD 253 57.22 c.1.2.1 28535 2pajA 492 57.24 1g67A 225 59.20 c.1.3.1 60311 2b81A 323 59.23 1gkpA 458 59.26 b.92.1.3,c.1.9.6 70231,70232 2r8cA 426 61.77 2bneA 241 63.32 c.73.1.3 128824 1zuaX 317 63.70 2r2nA 425 64.09 1ezwA 349 65.21 c.1.16.3 29558 1h5yA 253 66.19 c.1.2.1 65638 1hw6A 278 66.40 c.1.7.1 61296 2a8yA 270 66.54 1nqkA 381 66.67 c.1.16.4 92050 1zgdA 312 66.83 2ac7A 235 67.33 c.56.2.1 126543 2dztA 248 67.41 1kkoA 413 68.40 c.1.11.2,d.54.1.1 68675,68676 1rzuA 485 69.26 c.87.1.8 105140 2vhlA 396 69.90 1v4vA 376 70.35 c.87.1.3 100313 1tvlA 454 70.47 c.1.16.4 107366 1j96A 323 71.97 c.1.7.1 71616 1xhcA 367 72.94 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2vefA 314 73.70 3cnyA 301 73.92 2hmcA 344 74.52 1lc5A 364 74.57 c.67.1.1 73827 3brsA 289 75.98 3c4vA 426 76.14 1frb 315 76.37 2zbwA 335 76.62 2fp4B 395 77.73 c.23.4.1,d.142.1.4 133897,133898 2qjjA 402 79.34 1kczA 413 79.76 c.1.11.2,d.54.1.1 68451,68452 1z08A 170 80.93 c.37.1.8 124303 2nliA 368 82.31 2gagB 405 82.42 1jq5A 370 84.07 e.22.1.2 67084 1p2fA 220 84.13 a.4.6.1,c.23.1.1 87720,87721 1a53A 247 84.47 c.1.2.4 28564 1m5wA 243 85.04 c.1.24.1 84836 2nlyA 245 85.36 c.6.2.7 138364 8abp 306 85.44 2ps2A 371 86.00 1a53 247 86.52 2g0wA 296 87.09 c.1.15.4 134503 1us0A 316 87.17 c.1.7.1 99850 2cygA 312 87.48 c.1.8.3 131025 1ad1A 266 88.24 c.1.21.1 29668 2dri 271 88.39 2rbkA 261 88.76