# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 4.18e-16 1m65A 245 1.07e-13 c.6.3.1 84847 2yxoA 267 9.08e-13 2anuA 255 1.53e-12 c.6.3.1 127058 1v77A 212 1.72e-06 c.6.3.2 108402 2qahA 303 0.4298 1j6oA 268 0.6004 c.1.9.12 77088 2gzxA 265 0.7591 2gokA 429 1.623 1o12A 376 1.756 b.92.1.5,c.1.9.10 80758,80759 2ffiA 288 1.795 c.1.9.15 133385 1yixA 265 2.458 c.1.9.12 123371 2icsA 379 2.692 b.92.1.8,c.1.9.14 137241,137242 2fb2A 340 2.979 2pgfA 371 3.080 1qtwA 285 3.661 c.1.15.1 29392 2g3fA 421 3.689 1vflA 356 4.490 c.1.9.1 120041 1zzmA 259 5.356 c.1.9.12 125911 2pg3A 232 5.382 2q09A 416 5.714 2ob3A 330 6.399 3c86A 328 6.615 1tv8A 340 7.391 c.1.28.3 107352 2vc7A 314 7.589 1bf6A 291 7.695 c.1.9.3 29065 3be7A 408 8.837 1o0yA 260 9.918 c.1.10.1 80756 2q02A 272 10.54 1yw1A 442 11.34 c.1.16.4 124130 1xwyA 264 11.35 c.1.9.12 122411 1yx1A 264 12.20 c.1.15.7 124169 2qw5A 335 13.24 1yrrA 382 14.39 b.92.1.5,c.1.9.10 123935,123936 1ybqB 390 14.69 2f6kA 307 15.02 c.1.9.15 133047 2z00A 426 15.52 2amxA 376 16.00 c.1.9.1 127024 1a0cA 438 17.57 c.1.15.3 29529 1a0dA 440 19.03 c.1.15.3 29533 1xrtA 467 19.95 b.92.1.3,c.1.9.6 122258,122259 1ra0A 430 20.00 b.92.1.2,c.1.9.5 111756,111757 1j96A 323 20.16 c.1.7.1 71616 1lqaA 346 20.76 c.1.7.1 84674 1f6yA 262 22.08 c.1.21.2 29673 1z82A 335 24.54 2puzA 419 25.40 1h5yA 253 26.03 c.1.2.1 65638 1i0dA 332 26.59 c.1.9.3 61487 1muwA 386 27.53 c.1.15.3 79495 2qpxA 376 27.54 1q7zA 566 28.19 c.1.21.2,c.1.26.1 96090,96091 1b8oA 284 28.27 c.56.2.1 33762 1vc4A 254 28.58 c.1.2.4 100557 2qs8A 418 28.82 1i60A 278 28.91 c.1.15.4 71118 2g0wA 296 29.25 c.1.15.4 134503 1gkrA 458 31.93 b.92.1.3,c.1.9.6 70251,70252 2douA 376 32.58 1frb 315 32.83 1tvlA 454 32.89 c.1.16.4 107366 3b9oA 440 32.97 1gg4A 452 33.18 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2og9A 393 34.22 2pgwA 384 34.49 2hqbA 296 35.53 1pyfA 312 36.54 c.1.7.1 95334 3canA 182 36.62 1cb0A 283 36.94 c.56.2.1 33790 1ny1A 240 38.07 c.6.2.3 86395 2zbwA 335 38.68 2qjjA 402 39.49 3cgvA 397 39.96 2hk0A 309 39.99 1kkoA 413 40.55 c.1.11.2,d.54.1.1 68675,68676 2r8cA 426 40.89 3ct2A 382 42.62 1kkhA 317 43.06 d.14.1.5,d.58.26.3 72645,72646 3ciwA 348 44.06 1rhcA 330 44.47 c.1.16.3 97468 1k77A 260 44.69 c.1.15.5 72096 1xhcA 367 45.11 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2qulA 290 45.46 2yrrA 353 45.77 2rdxA 379 46.11 2vhlA 396 46.12 2qdeA 397 46.25 1f07A 321 48.53 c.1.16.3 59560 2bvcA 486 50.13 d.15.9.1,d.128.1.1 129243,129244 2zadA 345 51.82 1oltA 457 52.46 c.1.28.2 93334 1gkpA 458 53.10 b.92.1.3,c.1.9.6 70231,70232 1yxyA 234 53.66 c.1.2.5 124203 1p2fA 220 55.02 a.4.6.1,c.23.1.1 87720,87721 2a0nA 265 56.27 c.1.2.1 125961 1nu5A 370 57.53 c.1.11.2,d.54.1.1 92183,92184 3cumA 302 57.90 3c8nA 356 58.50 1ivnA 190 59.39 c.23.10.5 83719 1jq5A 370 59.43 e.22.1.2 67084 1vzwA 244 60.06 c.1.2.1 120553 1p1mA 406 60.83 b.92.1.4,c.1.9.9 87696,87697 2r8rA 228 61.04 3bofA 566 62.26 2nw0A 189 62.36 2qddA 378 62.57 2gagB 405 62.98 1thfD 253 64.35 c.1.2.1 28535 2cy8A 453 64.90 1qopA 268 65.38 c.1.2.4 28570 1kqpA 271 65.39 c.26.2.1 72883 2ac7A 235 65.41 c.56.2.1 126543 2vesA 299 66.71 2gekA 406 66.85 1fobA 334 68.29 c.1.8.3 83255 1ybdA 239 69.07 c.73.1.3 122884 1e8cA 498 69.10 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2pa6A 427 70.05 2ps2A 371 71.21 1je0A 236 72.46 c.56.2.1 66581 2nuhA 118 73.95 2gwnA 452 75.70 1rzuA 485 76.36 c.87.1.8 105140 2e7fA 262 77.15 1b5pA 385 79.02 c.67.1.1 90403 1rd5A 262 79.33 c.1.2.4 111772 2bneA 241 80.14 c.73.1.3 128824 2a8yA 270 81.50 2nqlA 388 81.64 1v4vA 376 81.79 c.87.1.3 100313 1ceo 343 82.50 2zc8A 369 82.87 2v3aA 384 83.12 2nlyA 245 84.08 c.6.2.7 138364 2pp3A 398 85.18 2b81A 323 85.50 1us0A 316 85.66 c.1.7.1 99850 2dztA 248 86.19 2pmqA 377 86.52 2i7gA 376 86.67 2egzA 219 87.00 1q6zA 528 89.02 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1n7kA 234 89.54 c.1.10.1 85374