# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 4.79e-15 1m65A 245 6.09e-13 c.6.3.1 84847 2yxoA 267 4.87e-12 2anuA 255 7.03e-12 c.6.3.1 127058 1v77A 212 3.68e-06 c.6.3.2 108402 2qahA 303 0.4499 1j6oA 268 0.7020 c.1.9.12 77088 2gzxA 265 0.8239 2gokA 429 1.778 1o12A 376 1.920 b.92.1.5,c.1.9.10 80758,80759 1yixA 265 2.254 c.1.9.12 123371 2ffiA 288 2.407 c.1.9.15 133385 2icsA 379 2.448 b.92.1.8,c.1.9.14 137241,137242 2fb2A 340 2.865 2pgfA 371 3.305 2pg3A 232 3.982 1qtwA 285 3.985 c.1.15.1 29392 1zzmA 259 4.210 c.1.9.12 125911 2q09A 416 6.109 2g3fA 421 6.263 2ob3A 330 6.316 2vc7A 314 6.947 1vflA 356 7.019 c.1.9.1 120041 1o0yA 260 7.452 c.1.10.1 80756 3be7A 408 7.533 1tv8A 340 7.767 c.1.28.3 107352 1xwyA 264 8.213 c.1.9.12 122411 3c86A 328 8.319 1bf6A 291 8.831 c.1.9.3 29065 2q02A 272 10.01 1yrrA 382 11.14 b.92.1.5,c.1.9.10 123935,123936 1yw1A 442 11.23 c.1.16.4 124130 1ybqB 390 11.26 2qw5A 335 11.38 1a0cA 438 11.90 c.1.15.3 29529 2z00A 426 12.31 2f6kA 307 14.02 c.1.9.15 133047 1xrtA 467 15.69 b.92.1.3,c.1.9.6 122258,122259 1a0dA 440 15.80 c.1.15.3 29533 1ra0A 430 17.85 b.92.1.2,c.1.9.5 111756,111757 1f6yA 262 18.21 c.1.21.2 29673 1yx1A 264 18.65 c.1.15.7 124169 2amxA 376 19.33 c.1.9.1 127024 1vc4A 254 19.36 c.1.2.4 100557 2douA 376 21.90 1j96A 323 22.42 c.1.7.1 71616 1gkrA 458 22.45 b.92.1.3,c.1.9.6 70251,70252 1muwA 386 22.57 c.1.15.3 79495 1lqaA 346 22.70 c.1.7.1 84674 1z82A 335 22.86 2qs8A 418 23.88 1i60A 278 24.05 c.1.15.4 71118 1h5yA 253 24.29 c.1.2.1 65638 3b9oA 440 29.54 1gg4A 452 31.83 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2r8cA 426 32.03 2puzA 419 32.95 2hk0A 309 33.47 1frb 315 33.55 2pgwA 384 34.01 2zbwA 335 36.10 2g0wA 296 36.36 c.1.15.4 134503 1rhcA 330 36.69 c.1.16.3 97468 1b8oA 284 37.34 c.56.2.1 33762 1cb0A 283 37.47 c.56.2.1 33790 1ny1A 240 37.67 c.6.2.3 86395 2qjjA 402 37.85 1kkoA 413 38.30 c.1.11.2,d.54.1.1 68675,68676 3ciwA 348 39.68 1i0dA 332 40.40 c.1.9.3 61487 3ct2A 382 41.24 1kqpA 271 41.79 c.26.2.1 72883 1yxyA 234 42.29 c.1.2.5 124203 2og9A 393 42.30 1k77A 260 42.34 c.1.15.5 72096 2vhlA 396 42.99 1pyfA 312 43.38 c.1.7.1 95334 2a0nA 265 45.09 c.1.2.1 125961 2qulA 290 45.19 1rd5A 262 45.47 c.1.2.4 111772 1tvlA 454 46.31 c.1.16.4 107366 1q7zA 566 46.45 c.1.21.2,c.1.26.1 96090,96091 3cgvA 397 47.01 2ps2A 371 47.23 1thfD 253 47.30 c.1.2.1 28535 1xhcA 367 47.69 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2gekA 406 47.80 1f07A 321 47.91 c.1.16.3 59560 1gkpA 458 48.04 b.92.1.3,c.1.9.6 70231,70232 2hqbA 296 48.34 2rdxA 379 49.72 2nw0A 189 51.27 3c8nA 356 51.30 2gwnA 452 51.75 1vzwA 244 52.47 c.1.2.1 120553 2qpxA 376 52.78 1ivnA 190 52.83 c.23.10.5 83719 3cumA 302 54.68 2egzA 219 54.80 2r8rA 228 55.42 2qdeA 397 55.84 3canA 182 56.87 2zadA 345 57.05 3bofA 566 57.60 1p2fA 220 58.34 a.4.6.1,c.23.1.1 87720,87721 2yrrA 353 59.24 1p1mA 406 60.48 b.92.1.4,c.1.9.9 87696,87697 1qopA 268 60.52 c.1.2.4 28570 2ac7A 235 60.77 c.56.2.1 126543 1jq5A 370 61.08 e.22.1.2 67084 1rzuA 485 62.35 c.87.1.8 105140 1n7kA 234 64.44 c.1.10.1 85374 1v4vA 376 66.91 c.87.1.3 100313 1qwkA 317 66.91 c.1.7.1 96482 2b81A 323 67.09 2dri 271 67.70 1ixkA 315 68.25 c.66.1.38 90716 1nu5A 370 68.72 c.1.11.2,d.54.1.1 92183,92184 1kkhA 317 68.85 d.14.1.5,d.58.26.3 72645,72646 2e7fA 262 70.02 1g5bA 221 71.30 d.159.1.3 60261 1ceo 343 71.57 2nlyA 245 73.01 c.6.2.7 138364 1ad1A 266 73.81 c.1.21.1 29668 1b5pA 385 74.41 c.67.1.1 90403 2vesA 299 74.97 1fobA 334 75.03 c.1.8.3 83255 1gl6A 436 75.78 c.37.1.11 70259 1e8cA 498 76.51 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2qddA 378 76.90 2v3aA 384 77.81 1je0A 236 78.67 c.56.2.1 66581 1ybdA 239 79.68 c.73.1.3 122884 2gagB 405 79.92 2nqlA 388 80.17 2ftwA 521 80.25 b.92.1.3,c.1.9.6 134083,134084 1oltA 457 81.16 c.1.28.2 93334 2zc8A 369 81.44 2pa6A 427 82.08 1hw6A 278 83.09 c.1.7.1 61296 1us0A 316 85.27 c.1.7.1 99850 2h3hA 313 86.13 2q0sA 216 87.45 2imrA 420 88.02 2driA 271 88.51 c.93.1.1 35637 2a8yA 270 89.04 2iw1A 374 89.37 c.87.1.8 137738 1q6zA 528 89.63 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2pmqA 377 89.94