# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 8.83e-16 1m65A 245 1.65e-13 c.6.3.1 84847 2yxoA 267 1.71e-12 2anuA 255 2.70e-12 c.6.3.1 127058 1v77A 212 2.11e-06 c.6.3.2 108402 2qahA 303 0.3441 1j6oA 268 0.7710 c.1.9.12 77088 2gzxA 265 0.9865 1o12A 376 1.543 b.92.1.5,c.1.9.10 80758,80759 2ffiA 288 1.850 c.1.9.15 133385 2gokA 429 1.982 2fb2A 340 2.433 1yixA 265 2.580 c.1.9.12 123371 2icsA 379 2.667 b.92.1.8,c.1.9.14 137241,137242 2pgfA 371 3.985 1qtwA 285 4.208 c.1.15.1 29392 2pg3A 232 4.276 1zzmA 259 5.511 c.1.9.12 125911 2g3fA 421 5.700 1o0yA 260 5.828 c.1.10.1 80756 2ob3A 330 5.954 1tv8A 340 6.494 c.1.28.3 107352 3c86A 328 7.056 2q09A 416 7.793 2vc7A 314 7.940 1bf6A 291 8.339 c.1.9.3 29065 2f6kA 307 8.595 c.1.9.15 133047 1vflA 356 8.757 c.1.9.1 120041 1xwyA 264 9.142 c.1.9.12 122411 1yw1A 442 10.44 c.1.16.4 124130 3be7A 408 10.80 2q02A 272 11.26 1ybqB 390 13.01 1yrrA 382 13.10 b.92.1.5,c.1.9.10 123935,123936 1a0cA 438 13.57 c.1.15.3 29529 2z00A 426 13.97 2qw5A 335 14.72 1a0dA 440 17.00 c.1.15.3 29533 1xrtA 467 17.03 b.92.1.3,c.1.9.6 122258,122259 1yx1A 264 17.23 c.1.15.7 124169 1f6yA 262 17.24 c.1.21.2 29673 1gkrA 458 18.17 b.92.1.3,c.1.9.6 70251,70252 1muwA 386 18.54 c.1.15.3 79495 1ra0A 430 18.59 b.92.1.2,c.1.9.5 111756,111757 1lqaA 346 19.23 c.1.7.1 84674 2hk0A 309 22.41 1h5yA 253 23.53 c.1.2.1 65638 1vc4A 254 24.72 c.1.2.4 100557 1z82A 335 24.76 1j96A 323 25.63 c.1.7.1 71616 2pgwA 384 26.49 1i60A 278 26.55 c.1.15.4 71118 2zbwA 335 27.90 2puzA 419 29.66 2douA 376 29.68 2qs8A 418 29.95 1b8oA 284 30.85 c.56.2.1 33762 1k77A 260 33.27 c.1.15.5 72096 1q7zA 566 33.58 c.1.21.2,c.1.26.1 96090,96091 2amxA 376 34.15 c.1.9.1 127024 1gg4A 452 34.79 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2qjjA 402 35.66 2vhlA 396 36.06 2qpxA 376 36.17 2qulA 290 36.41 3cgvA 397 36.62 3ct2A 382 37.43 2rdxA 379 37.91 1cb0A 283 38.50 c.56.2.1 33790 2g0wA 296 39.03 c.1.15.4 134503 2og9A 393 39.13 1rhcA 330 39.88 c.1.16.3 97468 3bofA 566 40.14 3b9oA 440 40.16 1kkoA 413 40.29 c.1.11.2,d.54.1.1 68675,68676 1gkpA 458 40.44 b.92.1.3,c.1.9.6 70231,70232 1vzwA 244 40.99 c.1.2.1 120553 1kkhA 317 42.05 d.14.1.5,d.58.26.3 72645,72646 1kqpA 271 42.21 c.26.2.1 72883 2r8cA 426 42.87 1frb 315 43.00 1i0dA 332 43.64 c.1.9.3 61487 2ps2A 371 43.65 3ciwA 348 44.15 1tvlA 454 45.08 c.1.16.4 107366 1ny1A 240 45.88 c.6.2.3 86395 2a0nA 265 47.78 c.1.2.1 125961 2gekA 406 49.98 1p2fA 220 50.16 a.4.6.1,c.23.1.1 87720,87721 1f07A 321 50.65 c.1.16.3 59560 2zadA 345 50.99 1yxyA 234 52.00 c.1.2.5 124203 2qdeA 397 53.32 3cumA 302 53.38 1rd5A 262 54.26 c.1.2.4 111772 1xhcA 367 54.99 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1thfD 253 55.75 c.1.2.1 28535 2nw0A 189 55.94 1jq5A 370 56.42 e.22.1.2 67084 2qddA 378 56.45 2hqbA 296 59.90 1v4vA 376 60.99 c.87.1.3 100313 3canA 182 61.01 1qopA 268 61.20 c.1.2.4 28570 1nu5A 370 61.58 c.1.11.2,d.54.1.1 92183,92184 1ivnA 190 61.72 c.23.10.5 83719 2r8rA 228 61.91 2nqlA 388 62.05 2e7fA 262 62.15 2pa6A 427 62.48 1g5bA 221 62.72 d.159.1.3 60261 2gagB 405 63.28 3c8nA 356 63.63 1ixkA 315 63.77 c.66.1.38 90716 1ybdA 239 63.87 c.73.1.3 122884 1pyfA 312 64.72 c.1.7.1 95334 1ceo 343 65.03 2vesA 299 65.66 1gl6A 436 66.68 c.37.1.11 70259 2zc8A 369 68.84 2yrrA 353 69.24 2nlyA 245 69.51 c.6.2.7 138364 2ftwA 521 73.82 b.92.1.3,c.1.9.6 134083,134084 1b5pA 385 74.87 c.67.1.1 90403 1oltA 457 75.13 c.1.28.2 93334 1n7kA 234 75.33 c.1.10.1 85374 2gwnA 452 75.85 2egzA 219 76.72 2v3aA 384 76.74 1ad1A 266 77.70 c.1.21.1 29668 1fobA 334 78.18 c.1.8.3 83255 2v3gA 283 78.35 2ac7A 235 81.37 c.56.2.1 126543 1q6zA 528 81.75 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2b81A 323 81.75 2dri 271 82.50 2iw1A 374 83.32 c.87.1.8 137738 2oycA 306 83.39 1p1mA 406 83.44 b.92.1.4,c.1.9.9 87696,87697 2guiA 194 85.19 c.55.3.5 135737 1kczA 413 85.89 c.1.11.2,d.54.1.1 68451,68452 2pgnA 589 86.11 2nuhA 118 86.39 1rzuA 485 87.20 c.87.1.8 105140 1je0A 236 87.57 c.56.2.1 66581 1lucA 355 87.94 c.1.16.1 29547 1qwkA 317 88.55 c.1.7.1 96482