# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 2.48e-13 1m65A 245 1.51e-10 c.6.3.1 84847 2yxoA 267 2.35e-10 2anuA 255 2.91e-10 c.6.3.1 127058 1v77A 212 0.000267 c.6.3.2 108402 2gzxA 265 0.4070 1j6oA 268 0.4439 c.1.9.12 77088 1zzmA 259 0.6687 c.1.9.12 125911 1xwyA 264 0.8914 c.1.9.12 122411 2icsA 379 1.306 b.92.1.8,c.1.9.14 137241,137242 1vflA 356 2.251 c.1.9.1 120041 3c86A 328 2.589 1yixA 265 2.730 c.1.9.12 123371 1bf6A 291 2.905 c.1.9.3 29065 3cjpA 272 3.005 2pgfA 371 3.944 2qahA 303 5.552 2gokA 429 5.576 3be7A 408 5.936 2egzA 219 6.605 1yx1A 264 7.187 c.1.15.7 124169 2q09A 416 7.875 2vc7A 314 7.980 2qw5A 335 8.038 2ffiA 288 8.282 c.1.9.15 133385 1o12A 376 8.396 b.92.1.5,c.1.9.10 80758,80759 2ob3A 330 8.684 1vc4A 254 9.056 c.1.2.4 100557 2hqbA 296 12.65 3ciwA 348 13.30 1qtwA 285 13.58 c.1.15.1 29392 2amxA 376 14.27 c.1.9.1 127024 2qpxA 376 14.32 1n7kA 234 14.34 c.1.10.1 85374 1i0dA 332 15.24 c.1.9.3 61487 1lqaA 346 15.72 c.1.7.1 84674 1tv8A 340 16.24 c.1.28.3 107352 1f6yA 262 16.96 c.1.21.2 29673 2nw0A 189 18.03 3bofA 566 18.42 3c8nA 356 19.82 2q02A 272 20.38 1gg4A 452 22.33 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1k77A 260 24.05 c.1.15.5 72096 1kkhA 317 24.42 d.14.1.5,d.58.26.3 72645,72646 1xrtA 467 25.17 b.92.1.3,c.1.9.6 122258,122259 1yxyA 234 25.40 c.1.2.5 124203 1yw1A 442 25.53 c.1.16.4 124130 1q7zA 566 25.91 c.1.21.2,c.1.26.1 96090,96091 2fb2A 340 25.94 2z00A 426 26.54 1vzwA 244 26.91 c.1.2.1 120553 2yx0A 342 27.00 2hk0A 309 28.08 2r8cA 426 28.32 1rhcA 330 28.57 c.1.16.3 97468 2e7fA 262 28.83 2qulA 290 29.30 2puzA 419 29.65 1muwA 386 30.72 c.1.15.3 79495 2csuA 457 31.58 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2j6vA 301 33.44 1m5wA 243 33.50 c.1.24.1 84836 1kkoA 413 33.75 c.1.11.2,d.54.1.1 68675,68676 2ejaA 338 33.94 2nqlA 388 34.05 1thfD 253 35.85 c.1.2.1 28535 2o55A 258 35.94 1h5yA 253 37.13 c.1.2.1 65638 1a0cA 438 38.26 c.1.15.3 29529 1ra0A 430 38.70 b.92.1.2,c.1.9.5 111756,111757 3ct2A 382 40.33 1ybqB 390 42.03 1gkrA 458 42.98 b.92.1.3,c.1.9.6 70251,70252 2dztA 248 43.02 1f07A 321 43.86 c.1.16.3 59560 2ogyA 262 44.01 2v3gA 283 46.33 2b81A 323 46.44 2a0nA 265 47.23 c.1.2.1 125961 3c6qA 311 47.25 3b5vA 248 47.81 3brsA 289 48.20 8abp 306 48.46 2qs8A 418 48.89 2h3hA 313 49.07 1a53 247 49.47 2g3fA 421 49.66 1w8sA 263 49.70 c.1.10.1 120744 2yr1A 257 49.73 1i60A 278 51.46 c.1.15.4 71118 2zbwA 335 51.57 1e8cA 498 51.85 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 8abpA 306 54.13 c.93.1.1 35647 1g67A 225 54.36 c.1.3.1 60311 1y0eA 223 54.65 c.1.2.5 116297 1kczA 413 54.78 c.1.11.2,d.54.1.1 68451,68452 1vkfA 188 56.01 c.1.29.1 108656 2r8wA 332 56.76 1o0yA 260 57.97 c.1.10.1 80756 1cb0A 283 58.30 c.56.2.1 33790 2zadA 345 61.14 2i2xA 461 62.54 1nnsA 326 63.45 c.88.1.1 85910 2i7gA 376 63.85 7odcA 424 63.90 b.49.2.3,c.1.6.1 26488,28650 2og9A 393 64.54 1lucA 355 65.77 c.1.16.1 29547 2ps2A 371 66.34 1a0dA 440 66.96 c.1.15.3 29533 1ny1A 240 67.16 c.6.2.3 86395 3cgvA 397 67.55 1ezwA 349 68.27 c.1.16.3 29558 1f0kA 364 68.63 c.87.1.2 35465 1a53A 247 70.89 c.1.2.4 28564 2r8rA 228 71.00 3canA 182 71.04 2nlyA 245 72.10 c.6.2.7 138364 1rd5A 262 72.69 c.1.2.4 111772 2p10A 286 73.00 2pa6A 427 73.19 3c4vA 426 73.37 2oktA 342 74.45 2qjjA 402 74.56 2fvyA 309 75.45 c.93.1.1 134227 1lucB 324 75.69 c.1.16.1 29548 1vbuA 328 77.19 c.1.8.3 119963 2pg3A 232 77.83 2zc8A 369 78.67 2himA 358 78.83 2cc0A 195 79.69 c.6.2.3 130209 2oqhA 385 79.82 1nqkA 381 80.45 c.1.16.4 92050 1kbjA 412 80.81 c.1.4.1 72280 2guiA 194 81.25 c.55.3.5 135737 1o7jA 327 81.34 c.88.1.1 81140 1yacA 208 82.49 c.33.1.3 31757 1qo2A 241 84.79 c.1.2.1 28533 2citA 282 85.20 c.1.8.3 130499 2qv5A 261 85.55 2agkA 260 86.26 1j31A 262 86.26 d.160.1.2 90808 1m2kA 249 86.37 c.31.1.5 84754 2qgyA 391 87.05 1qopA 268 87.20 c.1.2.4 28570 2nxwA 565 88.49 2pajA 492 88.85 1vljA 407 89.50 e.22.1.2 108832