# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 2.00e-13 1m65A 245 1.06e-11 c.6.3.1 84847 2yxoA 267 7.05e-11 2anuA 255 1.03e-10 c.6.3.1 127058 1v77A 212 2.56e-05 c.6.3.2 108402 2gzxA 265 0.5107 1j6oA 268 0.9068 c.1.9.12 77088 1yixA 265 0.9679 c.1.9.12 123371 2qahA 303 1.266 1o12A 376 1.434 b.92.1.5,c.1.9.10 80758,80759 1vflA 356 1.501 c.1.9.1 120041 2pgfA 371 1.506 1zzmA 259 1.619 c.1.9.12 125911 2ffiA 288 1.824 c.1.9.15 133385 1xwyA 264 2.134 c.1.9.12 122411 2fb2A 340 2.792 2icsA 379 2.831 b.92.1.8,c.1.9.14 137241,137242 2gokA 429 3.280 2amxA 376 4.152 c.1.9.1 127024 1yx1A 264 4.727 c.1.15.7 124169 1bf6A 291 4.752 c.1.9.3 29065 2g3fA 421 5.664 2pg3A 232 6.532 2ob3A 330 6.840 1i0dA 332 9.016 c.1.9.3 61487 2qpxA 376 9.200 3c86A 328 9.232 1tv8A 340 9.310 c.1.28.3 107352 1qtwA 285 10.09 c.1.15.1 29392 2q09A 416 11.99 1ybqB 390 12.02 2z00A 426 12.43 1o0yA 260 13.37 c.1.10.1 80756 1yw1A 442 14.27 c.1.16.4 124130 1yrrA 382 15.09 b.92.1.5,c.1.9.10 123935,123936 2vc7A 314 15.91 1j96A 323 16.05 c.1.7.1 71616 1xrtA 467 16.35 b.92.1.3,c.1.9.6 122258,122259 3be7A 408 18.06 1k77A 260 18.41 c.1.15.5 72096 2q02A 272 19.52 1f6yA 262 19.52 c.1.21.2 29673 3ciwA 348 20.04 1cb0A 283 20.17 c.56.2.1 33790 1nsjA 205 20.34 c.1.2.4 28560 1b8oA 284 20.74 c.56.2.1 33762 1frb 315 21.60 2qs8A 418 21.67 1gkrA 458 23.08 b.92.1.3,c.1.9.6 70251,70252 1zuaX 317 24.42 1pyfA 312 26.94 c.1.7.1 95334 1a0cA 438 27.38 c.1.15.3 29529 1us0A 316 28.57 c.1.7.1 99850 1lqaA 346 28.61 c.1.7.1 84674 2f6kA 307 28.90 c.1.9.15 133047 1s1pA 331 30.31 c.1.7.1 98350 1hw6A 278 31.97 c.1.7.1 61296 3canA 182 33.64 1muwA 386 34.31 c.1.15.3 79495 1i60A 278 34.41 c.1.15.4 71118 2puzA 419 34.64 2a0nA 265 35.34 c.1.2.1 125961 1h5yA 253 35.53 c.1.2.1 65638 1z82A 335 36.06 3b9oA 440 36.19 2hk0A 309 36.26 1g67A 225 36.32 c.1.3.1 60311 1vc4A 254 36.63 c.1.2.4 100557 3bofA 566 37.55 1qwkA 317 39.13 c.1.7.1 96482 1ny1A 240 39.34 c.6.2.3 86395 2qjjA 402 39.51 1q7zA 566 40.63 c.1.21.2,c.1.26.1 96090,96091 2pajA 492 42.81 1ra0A 430 44.07 b.92.1.2,c.1.9.5 111756,111757 2gekA 406 46.30 2b81A 323 46.67 3beoA 375 48.13 2hqbA 296 50.31 2gwnA 452 50.76 2r8cA 426 50.80 1mi3A 322 51.49 c.1.7.1 91274 2g0wA 296 51.50 c.1.15.4 134503 2bneA 241 52.27 c.73.1.3 128824 2bvcA 486 52.70 d.15.9.1,d.128.1.1 129243,129244 1ybdA 239 53.31 c.73.1.3 122884 2dri 271 54.10 1vzwA 244 54.89 c.1.2.1 120553 2h3hA 313 55.51 2qw5A 335 56.23 1vbjA 281 56.31 2qulA 290 56.52 2hejA 323 58.23 1zgdA 312 58.55 1yxyA 234 58.63 c.1.2.5 124203 1gg4A 452 59.58 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1thfD 253 59.84 c.1.2.1 28535 2a8yA 270 59.92 1kqpA 271 60.19 c.26.2.1 72883 1f07A 321 61.26 c.1.16.3 59560 2ao0A 324 62.90 3c8nA 356 64.41 3cumA 302 64.78 1a0dA 440 66.04 c.1.15.3 29533 1xhcA 367 66.08 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2dztA 248 66.42 1nnsA 326 68.42 c.88.1.1 85910 2o55A 258 69.02 1gudA 288 69.76 c.93.1.1 83326 2driA 271 70.89 c.93.1.1 35637 2e7fA 262 71.77 2vesA 299 72.09 2r8wA 332 72.27 1uehA 253 72.45 c.101.1.1 99259 2ojpA 292 72.85 2gwgA 350 73.06 c.1.9.15 135805 2egzA 219 73.26 1kkoA 413 73.96 c.1.11.2,d.54.1.1 68675,68676 2qt3A 403 75.05 2nlyA 245 75.63 c.6.2.7 138364 1p2fA 220 76.30 a.4.6.1,c.23.1.1 87720,87721 2vhlA 396 77.66 2og9A 393 77.78 1a53 247 78.80 2rfgA 297 78.87 1v4vA 376 78.88 c.87.1.3 100313 2nliA 368 80.27 1p1mA 406 80.55 b.92.1.4,c.1.9.9 87696,87697 1fxxA 482 81.73 c.55.3.5 33726 2a1fA 247 82.31 c.73.1.3 125991 2pgnA 589 83.64 2pgwA 384 83.71 2pa6A 427 84.07 1ezwA 349 86.27 c.1.16.3 29558 2r8rA 228 87.50 2gagB 405 87.67 2qv5A 261 89.21 1q6zA 528 89.66 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2ac7A 235 89.94 c.56.2.1 126543