# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 3.51e-13 1m65A 245 1.15e-10 c.6.3.1 84847 2anuA 255 2.76e-10 c.6.3.1 127058 2yxoA 267 4.49e-10 1v77A 212 8.85e-05 c.6.3.2 108402 2gzxA 265 0.6548 1o12A 376 1.093 b.92.1.5,c.1.9.10 80758,80759 1j6oA 268 1.249 c.1.9.12 77088 2qahA 303 1.597 1xwyA 264 2.093 c.1.9.12 122411 1yixA 265 2.163 c.1.9.12 123371 2pgfA 371 2.380 2icsA 379 2.572 b.92.1.8,c.1.9.14 137241,137242 2ffiA 288 2.891 c.1.9.15 133385 1zzmA 259 3.366 c.1.9.12 125911 1yx1A 264 4.058 c.1.15.7 124169 3be7A 408 4.211 2gokA 429 4.253 1gkrA 458 5.303 b.92.1.3,c.1.9.6 70251,70252 1lqaA 346 5.591 c.1.7.1 84674 1vflA 356 5.945 c.1.9.1 120041 2fb2A 340 6.257 3c86A 328 6.289 1xrtA 467 7.297 b.92.1.3,c.1.9.6 122258,122259 2g3fA 421 7.473 2amxA 376 7.651 c.1.9.1 127024 2pajA 492 7.720 2f6kA 307 8.781 c.1.9.15 133047 2z00A 426 8.828 2pg3A 232 10.18 1bf6A 291 10.28 c.1.9.3 29065 1yrrA 382 10.62 b.92.1.5,c.1.9.10 123935,123936 1yw1A 442 10.89 c.1.16.4 124130 1k77A 260 11.28 c.1.15.5 72096 1frb 315 12.34 1mi3A 322 12.76 c.1.7.1 91274 2ez9A 603 13.84 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1tv8A 340 14.37 c.1.28.3 107352 1ybqB 390 15.68 1qtwA 285 15.92 c.1.15.1 29392 1q7zA 566 17.72 c.1.21.2,c.1.26.1 96090,96091 2vc7A 314 17.72 2ob3A 330 18.05 2q02A 272 19.12 1g5aA 628 19.69 b.71.1.1,c.1.8.1 65152,65153 1nsjA 205 20.43 c.1.2.4 28560 2gwnA 452 22.08 1o0yA 260 22.99 c.1.10.1 80756 1ra0A 430 23.04 b.92.1.2,c.1.9.5 111756,111757 2hqbA 296 24.27 2qs8A 418 24.39 3ciwA 348 24.44 2qt3A 403 25.38 1pyfA 312 25.46 c.1.7.1 95334 1i60A 278 26.26 c.1.15.4 71118 1vzwA 244 26.77 c.1.2.1 120553 1qwkA 317 27.23 c.1.7.1 96482 3beoA 375 27.52 2bryA 497 27.72 1s1pA 331 28.35 c.1.7.1 98350 1zuaX 317 29.47 1i0dA 332 29.93 c.1.9.3 61487 2p0iA 456 32.37 1z82A 335 33.20 1b8oA 284 33.51 c.56.2.1 33762 2oycA 306 34.24 1e0tA 470 34.44 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1j96A 323 34.45 c.1.7.1 71616 1h5yA 253 34.77 c.1.2.1 65638 2zc8A 369 34.92 2e57A 637 34.97 1g67A 225 35.31 c.1.3.1 60311 1f6yA 262 37.40 c.1.21.2 29673 1hw6A 278 38.10 c.1.7.1 61296 3b9oA 440 38.33 2r8wA 332 39.62 2djiA 590 42.46 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1kqpA 271 44.58 c.26.2.1 72883 2qw5A 335 44.93 3canA 182 45.23 1cb0A 283 45.88 c.56.2.1 33790 2ojpA 292 47.32 1xhcA 367 51.18 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1xviA 275 51.75 c.108.1.10 116088 2hk0A 309 53.39 1thfD 253 54.08 c.1.2.1 28535 1qwgA 251 54.19 c.1.27.1 96473 1uhvA 500 54.98 b.71.1.2,c.1.8.3 99402,99403 2v3gA 283 54.99 1pz1A 333 55.44 c.1.7.1 95390 1usgA 346 55.64 c.93.1.1 99864 2bhuA 602 56.19 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 2h3hA 313 56.43 1t9bA 677 56.63 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 2q09A 416 56.80 1vc4A 254 57.36 c.1.2.4 100557 1tezA 474 57.42 a.99.1.1,c.28.1.1 112409,112410 1ozhA 566 58.56 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2rfgA 297 58.84 3c8nA 356 59.38 1muwA 386 59.38 c.1.15.3 79495 1rhcA 330 60.24 c.1.16.3 97468 2ehhA 294 60.54 2ac7A 235 60.99 c.56.2.1 126543 1uehA 253 61.32 c.101.1.1 99259 1jx6A 342 61.89 c.93.1.1 67406 1vl2A 421 62.17 c.26.2.1,d.210.1.1 108708,108709 2hmcA 344 64.92 2pq8A 278 65.24 2gekA 406 66.40 1ny1A 240 66.59 c.6.2.3 86395 2ps2A 371 66.72 2vesA 299 66.76 2gagB 405 66.86 1q6zA 528 67.07 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2pgwA 384 67.41 2yx0A 342 68.24 1k92A 455 69.27 c.26.2.1,d.210.1.1 68325,68326 1vbjA 281 69.39 2qulA 290 69.68 2dztA 248 70.16 2gwgA 350 70.93 c.1.9.15 135805 3c9fA 557 70.96 1us0A 316 71.62 c.1.7.1 99850 1xkyA 301 73.35 c.1.10.1 122094 8abpA 306 73.67 c.93.1.1 35647 1a53 247 75.54 1yxyA 234 75.56 c.1.2.5 124203 1gudA 288 77.10 c.93.1.1 83326 2ftwA 521 77.98 b.92.1.3,c.1.9.6 134083,134084 1v5xA 203 78.18 c.1.2.4 100377 2atsA 292 79.27 c.1.10.1 127306 3bioA 304 79.28 8abp 306 80.90 1zsxA 347 81.38 2fjbA 643 81.78 1tvlA 454 82.43 c.1.16.4 107366 2qv5A 261 82.53 1xi3A 215 83.28 c.1.3.1 109601 2egzA 219 83.55 2oqhA 385 85.64 1e43A 483 85.77 b.71.1.1,c.1.8.1 59217,59218 1ht6A 405 86.81 b.71.1.1,c.1.8.1 83629,83630 2ao0A 324 87.85 2b81A 323 87.98 1nnsA 326 89.16 c.88.1.1 85910