# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 2.46e-13 1m65A 245 1.35e-11 c.6.3.1 84847 2yxoA 267 6.89e-11 2anuA 255 1.25e-10 c.6.3.1 127058 1v77A 212 3.46e-05 c.6.3.2 108402 2gzxA 265 0.4888 1j6oA 268 0.9332 c.1.9.12 77088 1yixA 265 1.134 c.1.9.12 123371 2qahA 303 1.359 2ffiA 288 1.614 c.1.9.15 133385 1zzmA 259 1.711 c.1.9.12 125911 1o12A 376 1.740 b.92.1.5,c.1.9.10 80758,80759 1xwyA 264 1.777 c.1.9.12 122411 1vflA 356 1.923 c.1.9.1 120041 2pgfA 371 1.933 1yx1A 264 2.678 c.1.15.7 124169 2fb2A 340 2.885 2icsA 379 3.765 b.92.1.8,c.1.9.14 137241,137242 2gokA 429 4.920 2amxA 376 5.058 c.1.9.1 127024 2ob3A 330 5.466 1bf6A 291 5.480 c.1.9.3 29065 2pg3A 232 6.260 3c86A 328 7.330 1i0dA 332 7.953 c.1.9.3 61487 2qpxA 376 8.410 2g3fA 421 9.034 1ybqB 390 9.078 1tv8A 340 9.462 c.1.28.3 107352 1qtwA 285 10.81 c.1.15.1 29392 1yw1A 442 11.26 c.1.16.4 124130 1o0yA 260 12.07 c.1.10.1 80756 2vc7A 314 13.10 1k77A 260 14.51 c.1.15.5 72096 3ciwA 348 14.75 2z00A 426 14.89 1xrtA 467 15.62 b.92.1.3,c.1.9.6 122258,122259 1f6yA 262 16.63 c.1.21.2 29673 2q02A 272 16.90 1a0cA 438 17.71 c.1.15.3 29529 1j96A 323 17.95 c.1.7.1 71616 1lqaA 346 19.41 c.1.7.1 84674 2q09A 416 20.10 2qs8A 418 20.73 1yrrA 382 22.03 b.92.1.5,c.1.9.10 123935,123936 1nsjA 205 22.53 c.1.2.4 28560 1frb 315 23.02 1gkrA 458 23.33 b.92.1.3,c.1.9.6 70251,70252 1cb0A 283 23.55 c.56.2.1 33790 1pyfA 312 24.80 c.1.7.1 95334 2f6kA 307 25.02 c.1.9.15 133047 3be7A 408 26.79 1zuaX 317 27.82 1b8oA 284 29.12 c.56.2.1 33762 3bofA 566 29.90 2hk0A 309 29.96 1i60A 278 30.35 c.1.15.4 71118 1muwA 386 30.71 c.1.15.3 79495 3b9oA 440 33.00 1us0A 316 33.98 c.1.7.1 99850 1hw6A 278 34.16 c.1.7.1 61296 1s1pA 331 34.73 c.1.7.1 98350 3canA 182 35.19 2a0nA 265 35.19 c.1.2.1 125961 1q7zA 566 35.69 c.1.21.2,c.1.26.1 96090,96091 1h5yA 253 36.56 c.1.2.1 65638 3beoA 375 36.64 2puzA 419 36.67 1z82A 335 37.69 2qjjA 402 38.53 1g67A 225 38.81 c.1.3.1 60311 1ra0A 430 39.92 b.92.1.2,c.1.9.5 111756,111757 2hqbA 296 40.75 1gg4A 452 41.38 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2dri 271 42.21 2b81A 323 42.60 1qwkA 317 43.97 c.1.7.1 96482 2gwnA 452 43.98 1ny1A 240 45.71 c.6.2.3 86395 1vc4A 254 47.21 c.1.2.4 100557 2gwgA 350 47.23 c.1.9.15 135805 1vzwA 244 49.20 c.1.2.1 120553 2qw5A 335 50.17 2r8cA 426 50.34 1mi3A 322 50.73 c.1.7.1 91274 1fxxA 482 51.23 c.55.3.5 33726 2h3hA 313 51.25 2driA 271 51.68 c.93.1.1 35637 1kqpA 271 52.75 c.26.2.1 72883 2g0wA 296 52.78 c.1.15.4 134503 2qulA 290 54.84 1thfD 253 56.36 c.1.2.1 28535 1f07A 321 58.64 c.1.16.3 59560 1zgdA 312 58.64 2pajA 492 59.00 1yxyA 234 59.20 c.1.2.5 124203 3c8nA 356 59.73 2ojpA 292 61.32 2e7fA 262 61.91 3cumA 302 62.11 1gudA 288 62.73 c.93.1.1 83326 1vbjA 281 62.95 2pgwA 384 63.84 1a0dA 440 64.66 c.1.15.3 29533 2r8wA 332 64.93 1uehA 253 65.89 c.101.1.1 99259 2hejA 323 66.48 1v4vA 376 66.51 c.87.1.3 100313 2bneA 241 66.97 c.73.1.3 128824 1nnsA 326 67.69 c.88.1.1 85910 2ao0A 324 67.88 2gekA 406 68.01 1oltA 457 68.54 c.1.28.2 93334 2nlyA 245 71.36 c.6.2.7 138364 1ybdA 239 71.80 c.73.1.3 122884 2yx0A 342 72.13 2r8rA 228 73.95 2oycA 306 74.10 1a53 247 74.66 1vl2A 421 74.89 c.26.2.1,d.210.1.1 108708,108709 2egxA 269 74.94 2zc8A 369 75.37 2a8yA 270 76.18 2guiA 194 76.61 c.55.3.5 135737 2rfgA 297 77.33 2dztA 248 78.49 1e8cA 498 78.98 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1rhcA 330 79.24 c.1.16.3 97468 1xi3A 215 79.40 c.1.3.1 109601 2og9A 393 80.73 1jq5A 370 81.59 e.22.1.2 67084 1kkoA 413 82.20 c.1.11.2,d.54.1.1 68675,68676 1p2fA 220 82.38 a.4.6.1,c.23.1.1 87720,87721 1qopA 268 83.34 c.1.2.4 28570 1tvlA 454 83.48 c.1.16.4 107366 3c6qA 311 83.77 1rd5A 262 84.73 c.1.2.4 111772 2qt3A 403 84.97 1ezwA 349 85.08 c.1.16.3 29558 2pgnA 589 85.19 2gagB 405 86.94 2z2uA 311 87.09 2v3gA 283 88.11