# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 2.24e-16 1m65A 245 3.83e-14 c.6.3.1 84847 2anuA 255 1.26e-12 c.6.3.1 127058 2yxoA 267 2.03e-12 1v77A 212 2.18e-06 c.6.3.2 108402 2qahA 303 0.4366 1j6oA 268 0.4702 c.1.9.12 77088 2gzxA 265 0.6335 1o12A 376 0.6949 b.92.1.5,c.1.9.10 80758,80759 2gokA 429 1.339 2icsA 379 1.344 b.92.1.8,c.1.9.14 137241,137242 2pgfA 371 1.753 2ffiA 288 2.138 c.1.9.15 133385 1yixA 265 2.237 c.1.9.12 123371 1zzmA 259 2.828 c.1.9.12 125911 1xwyA 264 3.524 c.1.9.12 122411 1vflA 356 3.810 c.1.9.1 120041 2pg3A 232 5.118 2fb2A 340 5.160 1o0yA 260 5.827 c.1.10.1 80756 1ybqB 390 5.964 3c86A 328 6.671 1bf6A 291 6.682 c.1.9.3 29065 2g3fA 421 6.976 2z00A 426 7.226 1yw1A 442 8.062 c.1.16.4 124130 1yrrA 382 8.478 b.92.1.5,c.1.9.10 123935,123936 2q09A 416 9.180 3be7A 408 10.30 2qpxA 376 10.77 1qtwA 285 11.20 c.1.15.1 29392 2ob3A 330 11.88 2amxA 376 12.18 c.1.9.1 127024 1lqaA 346 14.66 c.1.7.1 84674 2f6kA 307 14.90 c.1.9.15 133047 1tv8A 340 15.24 c.1.28.3 107352 1ra0A 430 17.73 b.92.1.2,c.1.9.5 111756,111757 1yx1A 264 18.94 c.1.15.7 124169 1z82A 335 19.26 2qs8A 418 20.10 1f6yA 262 20.42 c.1.21.2 29673 1xrtA 467 23.61 b.92.1.3,c.1.9.6 122258,122259 3cjpA 272 25.71 1gkrA 458 26.36 b.92.1.3,c.1.9.6 70251,70252 2puzA 419 26.58 1cb0A 283 28.03 c.56.2.1 33790 1a0cA 438 28.69 c.1.15.3 29529 1b8oA 284 29.48 c.56.2.1 33762 1vc4A 254 31.00 c.1.2.4 100557 1kkhA 317 33.44 d.14.1.5,d.58.26.3 72645,72646 2hk0A 309 33.92 1k77A 260 35.09 c.1.15.5 72096 2bvcA 486 35.40 d.15.9.1,d.128.1.1 129243,129244 2h3hA 313 35.66 2qw5A 335 35.89 1g5bA 221 36.10 d.159.1.3 60261 2dri 271 41.21 1uehA 253 41.81 c.101.1.1 99259 2qjjA 402 41.83 2q02A 272 42.08 2vesA 299 42.31 2vc7A 314 43.75 1i0dA 332 47.17 c.1.9.3 61487 1ny1A 240 47.66 c.6.2.3 86395 1xhcA 367 48.21 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 3cgvA 397 48.36 3b9oA 440 49.83 2hqbA 296 50.57 2zbwA 335 50.97 1gg4A 452 52.97 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1e8cA 498 53.06 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1lv7A 257 53.06 c.37.1.20 78232 1muwA 386 54.09 c.1.15.3 79495 2yrrA 353 55.63 2r8rA 228 56.17 2driA 271 56.71 c.93.1.1 35637 2ez9A 603 56.76 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2pgwA 384 60.80 1a0dA 440 61.01 c.1.15.3 29533 1w8sA 263 61.04 c.1.10.1 120744 2guiA 194 61.62 c.55.3.5 135737 2pgnA 589 62.85 2a0nA 265 63.94 c.1.2.1 125961 1y8aA 332 64.18 1vzwA 244 65.27 c.1.2.1 120553 1gl6A 436 65.37 c.37.1.11 70259 1j96A 323 65.69 c.1.7.1 71616 1y1pA 342 66.26 c.2.1.2 122550 1nsjA 205 67.46 c.1.2.4 28560 1pyfA 312 67.50 c.1.7.1 95334 1v4vA 376 67.53 c.87.1.3 100313 3brsA 289 68.00 1kqpA 271 68.16 c.26.2.1 72883 2nw0A 189 68.18 3ciwA 348 68.18 1iv8A 720 68.91 b.71.1.1,c.1.8.1 76842,76843 1fxxA 482 69.23 c.55.3.5 33726 2vhlA 396 69.56 3beoA 375 70.06 2og9A 393 70.80 2nuhA 118 73.11 3canA 182 73.57 2gwnA 452 73.67 2r2nA 425 73.86 1n7kA 234 75.22 c.1.10.1 85374 1rhcA 330 75.34 c.1.16.3 97468 1oltA 457 75.51 c.1.28.2 93334 1p1mA 406 75.73 b.92.1.4,c.1.9.9 87696,87697 1tvlA 454 76.42 c.1.16.4 107366 3bofA 566 78.05 2pa6A 427 78.50 1a53 247 78.60 2ddxA 333 79.53 1o2dA 371 80.24 e.22.1.2 86591 2vefA 314 80.75 2pq8A 278 81.04 1nnsA 326 81.28 c.88.1.1 85910 3bioA 304 81.99 2v3aA 384 82.06 2a8yA 270 82.16 1jq5A 370 82.93 e.22.1.2 67084 2iuyA 342 85.07 2q0sA 216 86.30 1e43A 483 88.49 b.71.1.1,c.1.8.1 59217,59218 1yxyA 234 89.06 c.1.2.5 124203 2r8wA 332 89.08