# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 1.26e-16 1m65A 245 5.12e-14 c.6.3.1 84847 2anuA 255 7.15e-13 c.6.3.1 127058 2yxoA 267 8.22e-13 1v77A 212 1.44e-06 c.6.3.2 108402 2qahA 303 0.5150 1j6oA 268 0.5759 c.1.9.12 77088 2gzxA 265 0.9607 1vflA 356 1.218 c.1.9.1 120041 2pgfA 371 1.268 2gokA 429 1.356 2ffiA 288 1.648 c.1.9.15 133385 1o12A 376 1.675 b.92.1.5,c.1.9.10 80758,80759 1yixA 265 2.022 c.1.9.12 123371 2icsA 379 2.799 b.92.1.8,c.1.9.14 137241,137242 1zzmA 259 3.037 c.1.9.12 125911 1xwyA 264 3.777 c.1.9.12 122411 1bf6A 291 3.782 c.1.9.3 29065 2ob3A 330 4.718 3c86A 328 4.928 2g3fA 421 4.988 2fb2A 340 5.183 2pg3A 232 6.621 3be7A 408 6.672 1yx1A 264 6.782 c.1.15.7 124169 2z00A 426 6.885 1tv8A 340 8.008 c.1.28.3 107352 1ybqB 390 8.068 1yw1A 442 8.246 c.1.16.4 124130 1o0yA 260 9.257 c.1.10.1 80756 1qtwA 285 9.99 c.1.15.1 29392 2q09A 416 11.18 1yrrA 382 11.68 b.92.1.5,c.1.9.10 123935,123936 2vc7A 314 12.90 2amxA 376 12.98 c.1.9.1 127024 2qpxA 376 14.95 2f6kA 307 15.46 c.1.9.15 133047 1cb0A 283 18.12 c.56.2.1 33790 1z82A 335 18.26 1ny1A 240 19.80 c.6.2.3 86395 2puzA 419 20.12 1b8oA 284 20.26 c.56.2.1 33762 1k77A 260 20.92 c.1.15.5 72096 3ciwA 348 22.40 1lqaA 346 22.76 c.1.7.1 84674 1gkrA 458 23.44 b.92.1.3,c.1.9.6 70251,70252 1xrtA 467 23.94 b.92.1.3,c.1.9.6 122258,122259 2q02A 272 27.04 2qs8A 418 27.18 1kkhA 317 27.38 d.14.1.5,d.58.26.3 72645,72646 1f6yA 262 29.16 c.1.21.2 29673 3b9oA 440 29.55 1fxxA 482 29.75 c.55.3.5 33726 1ra0A 430 30.67 b.92.1.2,c.1.9.5 111756,111757 3cjpA 272 32.70 1vc4A 254 32.82 c.1.2.4 100557 2qw5A 335 33.16 1a0cA 438 34.28 c.1.15.3 29529 1i0dA 332 35.52 c.1.9.3 61487 2hk0A 309 36.00 2qjjA 402 38.63 2a0nA 265 39.97 c.1.2.1 125961 2nliA 368 40.65 3bofA 566 41.24 1f07A 321 41.93 c.1.16.3 59560 3canA 182 42.86 1jq5A 370 43.23 e.22.1.2 67084 2dri 271 44.47 1kkoA 413 46.00 c.1.11.2,d.54.1.1 68675,68676 2gagB 405 48.87 1uehA 253 52.29 c.101.1.1 99259 1nsjA 205 52.45 c.1.2.4 28560 3c8nA 356 52.75 1thfD 253 52.79 c.1.2.1 28535 1xhcA 367 53.01 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 3cgvA 397 53.49 1rhcA 330 53.65 c.1.16.3 97468 1p1mA 406 53.66 b.92.1.4,c.1.9.9 87696,87697 2vesA 299 54.93 1kbjA 412 55.79 c.1.4.1 72280 3brsA 289 56.07 2h3hA 313 58.25 2nlyA 245 58.59 c.6.2.7 138364 1q7zA 566 59.82 c.1.21.2,c.1.26.1 96090,96091 2qt3A 403 61.18 2bvcA 486 61.43 d.15.9.1,d.128.1.1 129243,129244 1liiA 363 63.55 c.72.1.1 73921 1vjoA 393 64.22 c.67.1.3 100827 1w8sA 263 64.50 c.1.10.1 120744 2b81A 323 64.63 2ps2A 371 65.00 2r2nA 425 65.35 2r8cA 426 65.52 2nuhA 118 65.58 1muwA 386 65.68 c.1.15.3 79495 2driA 271 66.05 c.93.1.1 35637 1vzwA 244 66.26 c.1.2.1 120553 1h5yA 253 66.33 c.1.2.1 65638 1tvlA 454 68.13 c.1.16.4 107366 2zadA 345 69.71 1v4vA 376 69.95 c.87.1.3 100313 2vefA 314 70.81 2og9A 393 71.27 1ybdA 239 71.36 c.73.1.3 122884 2a8yA 270 71.75 1a0dA 440 71.94 c.1.15.3 29533 1oltA 457 72.18 c.1.28.2 93334 2hqbA 296 72.50 1nu5A 370 72.72 c.1.11.2,d.54.1.1 92183,92184 2pa6A 427 73.05 2pgwA 384 75.50 1e43A 483 76.05 b.71.1.1,c.1.8.1 59217,59218 1yxyA 234 76.52 c.1.2.5 124203 1e0tA 470 77.45 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2cy8A 453 80.44 1goxA 369 82.87 c.1.4.1 28607 1pyfA 312 82.96 c.1.7.1 95334 1g67A 225 83.11 c.1.3.1 60311 1z08A 170 83.35 c.37.1.8 124303 3ct2A 382 83.73 2rdxA 379 83.82 1frb 315 84.28 1gl6A 436 84.86 c.37.1.11 70259 1ozhA 566 84.90 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2rduA 387 86.19 1t5hX 504 86.20 e.23.1.1 106449 2i7gA 376 86.21 2yrrA 353 86.44 1wr8A 231 86.51 c.108.1.10 114836 2pq8A 278 87.22 1y8aA 332 87.89 3cumA 302 87.97 2guiA 194 89.79 c.55.3.5 135737