# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 4.14e-17 1m65A 245 2.36e-14 c.6.3.1 84847 2yxoA 267 3.06e-13 2anuA 255 4.56e-13 c.6.3.1 127058 1v77A 212 1.55e-06 c.6.3.2 108402 2qahA 303 0.5236 1j6oA 268 0.5338 c.1.9.12 77088 2gzxA 265 0.6440 2pgfA 371 1.224 1o12A 376 1.550 b.92.1.5,c.1.9.10 80758,80759 2icsA 379 1.623 b.92.1.8,c.1.9.14 137241,137242 2gokA 429 1.690 1zzmA 259 2.329 c.1.9.12 125911 1yixA 265 2.399 c.1.9.12 123371 2ffiA 288 2.908 c.1.9.15 133385 2fb2A 340 4.460 1vflA 356 5.023 c.1.9.1 120041 1xwyA 264 5.435 c.1.9.12 122411 2qpxA 376 5.708 1yw1A 442 5.868 c.1.16.4 124130 1yx1A 264 5.898 c.1.15.7 124169 2z00A 426 6.103 3c86A 328 6.159 2pg3A 232 6.528 1bf6A 291 7.107 c.1.9.3 29065 1ybqB 390 7.593 2amxA 376 7.806 c.1.9.1 127024 2ob3A 330 7.916 1o0yA 260 8.471 c.1.10.1 80756 2f6kA 307 8.678 c.1.9.15 133047 2g3fA 421 8.916 1tv8A 340 8.989 c.1.28.3 107352 3be7A 408 9.800 2q09A 416 9.948 1qtwA 285 10.83 c.1.15.1 29392 2puzA 419 14.65 1xrtA 467 14.92 b.92.1.3,c.1.9.6 122258,122259 1lqaA 346 15.53 c.1.7.1 84674 1yrrA 382 16.62 b.92.1.5,c.1.9.10 123935,123936 1k77A 260 16.80 c.1.15.5 72096 1z82A 335 17.94 1cb0A 283 18.33 c.56.2.1 33790 3cjpA 272 20.24 2qs8A 418 21.18 2vc7A 314 24.33 1gkrA 458 24.51 b.92.1.3,c.1.9.6 70251,70252 1f6yA 262 25.17 c.1.21.2 29673 1fxxA 482 25.56 c.55.3.5 33726 1b8oA 284 26.38 c.56.2.1 33762 1ny1A 240 27.10 c.6.2.3 86395 2hqbA 296 27.28 1xhcA 367 27.74 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 3ciwA 348 31.02 2q02A 272 31.77 1ra0A 430 32.89 b.92.1.2,c.1.9.5 111756,111757 1vc4A 254 33.49 c.1.2.4 100557 1tvlA 454 34.14 c.1.16.4 107366 2qw5A 335 34.58 1a0cA 438 34.94 c.1.15.3 29529 1kkhA 317 36.51 d.14.1.5,d.58.26.3 72645,72646 3cgvA 397 36.88 2bvcA 486 36.98 d.15.9.1,d.128.1.1 129243,129244 3b9oA 440 39.11 2hk0A 309 40.14 1kkoA 413 40.29 c.1.11.2,d.54.1.1 68675,68676 2og9A 393 42.80 1uehA 253 43.79 c.101.1.1 99259 1kqpA 271 46.75 c.26.2.1 72883 1p1mA 406 47.13 b.92.1.4,c.1.9.9 87696,87697 1yxyA 234 48.29 c.1.2.5 124203 3bofA 566 48.86 2v3aA 384 49.11 1muwA 386 50.57 c.1.15.3 79495 3c8nA 356 50.75 2vefA 314 53.86 2qjjA 402 53.96 1v4vA 376 54.22 c.87.1.3 100313 3cumA 302 54.48 1vjoA 393 54.71 c.67.1.3 100827 1rhcA 330 54.94 c.1.16.3 97468 2nw0A 189 57.11 2b81A 323 57.79 2zbwA 335 59.08 2guiA 194 59.26 c.55.3.5 135737 2vesA 299 59.53 1f07A 321 59.62 c.1.16.3 59560 2douA 376 59.64 2i7gA 376 60.11 2a0nA 265 60.89 c.1.2.1 125961 1w8sA 263 60.92 c.1.10.1 120744 1q7zA 566 61.04 c.1.21.2,c.1.26.1 96090,96091 1i0dA 332 61.42 c.1.9.3 61487 1ybdA 239 61.47 c.73.1.3 122884 1h5yA 253 61.97 c.1.2.1 65638 1q6zA 528 63.22 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1jq5A 370 63.94 e.22.1.2 67084 3canA 182 65.02 1thfD 253 65.48 c.1.2.1 28535 1a0dA 440 66.14 c.1.15.3 29533 2pgwA 384 66.18 2r8cA 426 66.73 2yrrA 353 67.16 1pyfA 312 67.38 c.1.7.1 95334 1gl6A 436 68.62 c.37.1.11 70259 1n7kA 234 68.84 c.1.10.1 85374 1rzuA 485 69.31 c.87.1.8 105140 2nlyA 245 69.41 c.6.2.7 138364 2pa6A 427 69.78 1nsjA 205 70.10 c.1.2.4 28560 3beoA 375 70.64 1gg4A 452 71.15 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1ivnA 190 71.97 c.23.10.5 83719 1b5pA 385 72.13 c.67.1.1 90403 2nuhA 118 72.28 2gagB 405 73.03 2gwgA 350 74.76 c.1.9.15 135805 2v3gA 283 76.94 2r8rA 228 77.03 2egzA 219 78.26 1e43A 483 79.54 b.71.1.1,c.1.8.1 59217,59218 2a8yA 270 80.33 1a53 247 82.54 2qdeA 397 82.80 1y8aA 332 83.55 2qt3A 403 84.25 2dri 271 84.90 2qulA 290 85.60 2e7fA 262 86.14 1uok 558 86.25 1lv7A 257 86.80 c.37.1.20 78232 2bneA 241 88.02 c.73.1.3 128824 1z08A 170 88.03 c.37.1.8 124303 2gekA 406 88.12 2dztA 248 88.35 1iv8A 720 88.69 b.71.1.1,c.1.8.1 76842,76843 1oltA 457 89.20 c.1.28.2 93334