# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 5.23e-12 1m65A 245 1.63e-10 c.6.3.1 84847 2anuA 255 1.35e-09 c.6.3.1 127058 2yxoA 267 2.26e-09 1v77A 212 0.001013 c.6.3.2 108402 2qahA 303 0.3228 2ffiA 288 0.5850 c.1.9.15 133385 2gzxA 265 0.6729 1j6oA 268 0.7047 c.1.9.12 77088 3c86A 328 0.9605 1bf6A 291 1.486 c.1.9.3 29065 1vflA 356 1.488 c.1.9.1 120041 2icsA 379 2.423 b.92.1.8,c.1.9.14 137241,137242 2vc7A 314 2.618 1zzmA 259 2.821 c.1.9.12 125911 1xwyA 264 3.041 c.1.9.12 122411 1yixA 265 3.105 c.1.9.12 123371 2ob3A 330 3.925 2q09A 416 5.081 2gokA 429 6.771 2pgfA 371 8.630 1i0dA 332 8.683 c.1.9.3 61487 2hqbA 296 9.385 3ciwA 348 9.795 1vc4A 254 10.46 c.1.2.4 100557 2r8wA 332 11.24 2f6kA 307 13.10 c.1.9.15 133047 1lqaA 346 13.86 c.1.7.1 84674 1a0dA 440 14.69 c.1.15.3 29533 1fobA 334 14.96 c.1.8.3 83255 1thfD 253 15.04 c.1.2.1 28535 1ybqB 390 15.34 1rhcA 330 16.41 c.1.16.3 97468 1yxyA 234 18.16 c.1.2.5 124203 2hmcA 344 18.68 2pajA 492 19.13 1n7kA 234 19.18 c.1.10.1 85374 2qpxA 376 19.51 1twiA 434 20.09 b.49.2.3,c.1.6.1 107399,107400 2fb2A 340 20.68 2egzA 219 21.02 1muwA 386 21.75 c.1.15.3 79495 2v3gA 283 22.55 2a0nA 265 23.97 c.1.2.1 125961 1o12A 376 24.08 b.92.1.5,c.1.9.10 80758,80759 2j6vA 301 24.71 1k77A 260 28.94 c.1.15.5 72096 1vzwA 244 29.09 c.1.2.1 120553 1i60A 278 29.22 c.1.15.4 71118 1tv8A 340 30.19 c.1.28.3 107352 2rfgA 297 30.87 1qtwA 285 30.89 c.1.15.1 29392 1a0cA 438 31.14 c.1.15.3 29529 1xm7A 195 31.71 d.159.1.8 115473 1h5yA 253 31.87 c.1.2.1 65638 2nw0A 189 33.88 2ehhA 294 34.16 1qo2A 241 35.33 c.1.2.1 28533 1lwjA 441 35.89 b.71.1.1,c.1.8.1 74303,74304 1j79A 347 36.90 c.1.9.4 62675 3be7A 408 36.98 3c8nA 356 37.17 2z06A 252 38.29 2q02A 272 39.30 1fxxA 482 39.60 c.55.3.5 33726 1y0eA 223 39.78 c.1.2.5 116297 2r8rA 228 41.68 3bofA 566 42.35 2dpoA 319 42.77 2q8uA 336 42.85 1h1nA 305 44.91 c.1.8.3 70855 1xkyA 301 46.93 c.1.10.1 122094 1m5wA 243 47.99 c.1.24.1 84836 1g67A 225 51.42 c.1.3.1 60311 2yx0A 342 51.78 1nbaA 264 51.84 c.33.1.3 31753 2ojpA 292 53.56 1a53 247 54.13 2vefA 314 54.87 2p3eA 420 57.68 2citA 282 58.35 c.1.8.3 130499 2agkA 260 58.63 1pyfA 312 59.02 c.1.7.1 95334 1kbjA 412 59.04 c.1.4.1 72280 2amxA 376 59.72 c.1.9.1 127024 2dh2A 424 60.14 1ad1A 266 63.56 c.1.21.1 29668 1nnwA 252 63.94 d.159.1.5 80674 3b9oA 440 64.34 2nacA 393 65.24 c.2.1.4,c.23.12.1 30088,31348 2puzA 419 65.53 1twdA 256 65.89 c.1.30.1 107397 2qt3A 403 67.07 3c6qA 311 67.17 2b81A 323 69.88 2qulA 290 69.89 3cjpA 272 70.15 2g0wA 296 70.42 c.1.15.4 134503 1ejxC 567 71.28 b.92.1.1,c.1.9.2 83184,83185 2qw5A 335 71.53 1xdwA 331 71.66 2z2uA 311 72.82 2atsA 292 72.97 c.1.10.1 127306 1aj2A 282 73.33 c.1.21.1 29665 2g3fA 421 73.38 1t70A 255 73.38 d.159.1.9 112275 1aj2 282 73.97 1zhaA 267 75.12 1yc5A 246 75.77 c.31.1.5 122910 1w8sA 263 76.66 c.1.10.1 120744 1o60A 292 77.11 c.1.10.4 92532 3bk2A 562 77.46 2eg6A 347 78.33 2yxxA 386 79.47 1ht6A 405 80.97 b.71.1.1,c.1.8.1 83629,83630 1ny1A 240 81.20 c.6.2.3 86395 1f07A 321 81.46 c.1.16.3 59560 1gqnA 252 84.09 c.1.10.1 90514 1qwgA 251 84.62 c.1.27.1 96473 1yx1A 264 84.67 c.1.15.7 124169 3brsA 289 84.91 2z26A 347 86.19 2e7fA 262 86.99 1ceo 343 87.40 1gkpA 458 89.15 b.92.1.3,c.1.9.6 70231,70232 2i57A 438 89.71