# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 1.47e-05 2anuA 255 2.14e-05 c.6.3.1 127058 2yxoA 267 5.44e-05 1m65A 245 0.000201 c.6.3.1 84847 1v77A 212 1.479 c.6.3.2 108402 1bf6A 291 2.268 c.1.9.3 29065 3cjpA 272 3.926 1nvmA 345 4.844 a.5.7.1,c.1.10.5 86249,86250 2q09A 416 5.919 1o12A 376 6.898 b.92.1.5,c.1.9.10 80758,80759 1n7kA 234 7.820 c.1.10.1 85374 1gveA 327 8.632 c.1.7.1 70597 1i0dA 332 10.54 c.1.9.3 61487 2eplX 627 10.86 1uf5A 303 10.97 d.160.1.2 107808 2nx9A 464 11.13 1j6oA 268 11.25 c.1.9.12 77088 2r91A 286 11.34 1j31A 262 11.69 d.160.1.2 90808 1yrrA 382 11.96 b.92.1.5,c.1.9.10 123935,123936 3c86A 328 12.29 1f74A 293 12.29 c.1.10.1 29079 2vc7A 314 12.82 2q02A 272 12.86 2i2xA 461 13.91 1lwjA 441 16.35 b.71.1.1,c.1.8.1 74303,74304 1xrtA 467 16.43 b.92.1.3,c.1.9.6 122258,122259 2r8wA 332 16.52 2amxA 376 16.62 c.1.9.1 127024 1yixA 265 17.00 c.1.9.12 123371 1vjzA 341 17.02 c.1.8.3 100838 2gzxA 265 17.41 2qulA 290 17.77 1qhoA 686 18.35 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 2egzA 219 18.53 1cb0A 283 18.72 c.56.2.1 33790 2atsA 292 19.10 c.1.10.1 127306 1xwyA 264 19.26 c.1.9.12 122411 2nuwA 288 19.81 1yxyA 234 20.14 c.1.2.5 124203 1zjaA 557 20.15 2ze0A 555 20.54 2ob3A 330 21.13 1ra0A 430 21.77 b.92.1.2,c.1.9.5 111756,111757 2ojpA 292 22.20 2zdrA 349 23.12 2iuyA 342 23.48 3be7A 408 23.59 1l3lA 234 23.77 a.4.6.2,d.110.5.1 73541,73542 2guyA 478 24.20 b.71.1.1,c.1.8.1 135754,135755 1muwA 386 24.25 c.1.15.3 79495 1ub3A 220 24.55 c.1.10.1 88395 1oi7A 288 24.60 c.2.1.8,c.23.4.1 87049,87050 1vflA 356 25.17 c.1.9.1 120041 1oltA 457 25.30 c.1.28.2 93334 1hl2A 297 26.04 c.1.10.1 83581 1g94A 448 26.26 b.71.1.1,c.1.8.1 65169,65170 2vhhA 405 26.32 1yhtA 367 26.37 c.1.8.6 123213 1gkrA 458 26.60 b.92.1.3,c.1.9.6 70251,70252 2i5gA 325 26.92 1yx1A 264 27.29 c.1.15.7 124169 1iv8A 720 27.68 b.71.1.1,c.1.8.1 76842,76843 1thmA 279 28.19 c.41.1.1 32544 1vemA 516 28.23 b.3.1.1,c.1.8.1 120021,120022 2o4cA 380 28.25 2c5aA 379 28.40 c.2.1.2 129894 1zzmA 259 28.60 c.1.9.12 125911 1gciA 269 28.81 c.41.1.1 32503 1bh6A 274 29.12 c.41.1.1 32487 1vl2A 421 29.43 c.26.2.1,d.210.1.1 108708,108709 2qs8A 418 29.55 2exxA 306 29.83 1uok 558 30.19 1xw8A 252 31.16 c.6.2.5 116111 1lqaA 346 31.22 c.1.7.1 84674 1v6tA 255 32.53 c.6.2.5 113550 1g2oA 268 34.15 c.56.2.1 60228 2c0hA 353 34.46 c.1.8.3 129594 1ur4A 399 34.81 c.1.8.3 113402 1rqbA 539 35.58 a.5.7.2,c.1.10.5 105057,105058 1o5kA 306 35.73 c.1.10.1 92504 1h3gA 601 36.33 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 2puzA 419 36.62 1jixA 351 36.95 c.87.1.1 63081 2hmcA 344 37.31 1to2E 281 37.52 c.41.1.1 112595 3b4uA 294 37.75 3ciwA 348 38.62 2fb2A 340 39.65 1x1nA 524 40.17 c.1.8.1 121593 1vliA 385 40.27 b.85.1.1,c.1.10.6 108830,108831 1mzhA 225 40.59 c.1.10.1 79698 1j79A 347 40.67 c.1.9.4 62675 1w0mA 226 40.69 c.1.1.1 109027 2g3fA 421 41.09 2pgfA 371 41.70 2p2sA 336 42.77 1ht6A 405 42.87 b.71.1.1,c.1.8.1 83629,83630 1o60A 292 43.74 c.1.10.4 92532 2p0oA 372 44.38 1y0eA 223 44.83 c.1.2.5 116297 1uuqA 440 45.35 c.1.8.3 100015 2h88A 621 45.53 2i9uA 439 45.70 1xkyA 301 46.21 c.1.10.1 122094 3cnqS 266 46.91 2gasA 307 48.18 2bdqA 224 48.20 1ihoA 283 48.95 c.26.1.4 62390 1sznA 417 49.18 b.71.1.1,c.1.8.1 106162,106163 1ybdA 239 49.23 c.73.1.3 122884 1qe5A 266 49.43 c.56.2.1 33784 2glxA 332 49.52 1tv8A 340 50.79 c.1.28.3 107352 1uokA 558 51.18 b.71.1.1,c.1.8.1 27801,28788 1x13A 401 51.31 2hk0A 309 51.75 1pe1A 267 52.43 c.1.10.4 94591 2va1A 256 52.52 2pcqA 283 52.55 1onwA 390 53.34 b.92.1.7,c.1.9.13 87172,87173 1zhaA 267 54.04 1pz1A 333 54.46 c.1.7.1 95390 1korA 400 54.96 c.26.2.1,d.210.1.1 72824,72825 2podA 410 55.04 3c6cA 316 55.85 2c29D 337 56.42 1ohlA 342 56.42 c.1.10.3 87035 2aaaA 484 56.66 b.71.1.1,c.1.8.1 27777,28764 2eg6A 347 57.16 1gkpA 458 57.70 b.92.1.3,c.1.9.6 70231,70232 2cc0A 195 57.77 c.6.2.3 130209 1tz9A 367 57.86 c.1.15.6 107466 1nofA 383 59.10 b.71.1.2,c.1.8.3 92020,92021 2bneA 241 59.42 c.73.1.3 128824 2nwrA 267 59.92 1ktbA 405 59.97 b.71.1.1,c.1.8.1 72960,72961 2dh2A 424 60.21 2bs2A 660 60.88 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 1oc2A 348 61.20 c.2.1.2 92765 2gokA 429 61.35 1gci 269 61.47 1q1rA 431 61.48 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2pajA 492 61.69 1m5wA 243 62.06 c.1.24.1 84836 1n2eA 300 62.33 c.26.1.4 85268 2a84A 300 62.48 c.26.1.4 126389 1xgkA 352 63.58 c.2.1.2 115286 2gdqA 382 64.18 c.1.11.2,d.54.1.1 135020,135021 1vc4A 254 64.33 c.1.2.4 100557 3cgvA 397 64.54 1sb8A 352 64.75 c.2.1.2 105410 1ua7A 422 67.55 b.71.1.1,c.1.8.1 107759,107760 2ragA 417 68.13 2r8rA 228 69.19 1rvkA 382 69.39 c.1.11.2,d.54.1.1 97928,97929 1zbqA 327 69.86 c.2.1.2 124862 2a1fA 247 69.99 c.73.1.3 125991 1geeA 261 71.10 c.2.1.2 90509 1a0dA 440 71.12 c.1.15.3 29533 1v0lA 313 72.20 c.1.8.3 108207 2z00A 426 72.52 2v9dA 343 73.26 2douA 376 73.57 1ny1A 240 74.37 c.6.2.3 86395 1b5pA 385 75.43 c.67.1.1 90403 1to3A 304 76.25 c.1.10.1 107161 2ggsA 273 76.50 1trb 320 76.90 2dfaA 250 76.98 c.6.2.5 131469 1gvfA 286 77.24 c.1.10.2 70599 2f6kA 307 77.68 c.1.9.15 133047 2b69A 343 78.16 c.2.1.2 127974 1xuuA 349 79.05 b.85.1.1,c.1.10.6 116067,116068 1ynpA 317 79.21 2pg3A 232 79.50 1tz7A 505 79.59 c.1.8.1 119394 1orrA 347 80.11 c.2.1.2 93460 1yacA 208 80.53 c.33.1.3 31757 2z26A 347 81.20 2icsA 379 81.35 b.92.1.8,c.1.9.14 137241,137242 1pyfA 312 81.45 c.1.7.1 95334 2qw5A 335 82.35 1us0A 316 82.46 c.1.7.1 99850 2h6rA 219 82.55 2nxfA 322 82.85 1k7cA 233 83.05 c.23.10.4 68267 1ituA 369 83.12 c.1.9.7 71423 1uasA 362 83.30 b.71.1.1,c.1.8.1 88388,88389 1a0cA 438 83.69 c.1.15.3 29529 2gcuA 245 83.81 1r0rE 274 83.85 c.41.1.1 96735 1l6sA 323 85.47 c.1.10.3 73627 2rfgA 297 85.60 1rxyA 253 86.07 c.56.2.1 98065 1k0iA 394 86.47 c.3.1.2,d.16.1.2 67942,67943 2d1zA 436 86.61 1xdwA 331 87.71 1twdA 256 88.93 c.1.30.1 107397 1r7aA 504 88.95 b.71.1.1,c.1.8.1 97192,97193 1vkfA 188 89.43 c.1.29.1 108656 2ekpA 239 89.51