# List of top-scoring protein chains for T0407.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 1.63e-26 2hqaA 917 1.66e-26 2hpiA 1220 1.58e-23 2yxoA 267 2.48e-19 1m65A 245 2.62e-17 c.6.3.1 84847 2anuA 255 6.41e-16 c.6.3.1 127058 1z69A 327 0.4873 2vc7A 314 1.983 2ogjA 417 3.395 1vjrA 271 3.630 c.108.1.14 100832 2vhlA 396 4.298 1ezwA 349 5.442 c.1.16.3 29558 2j6vA 301 7.386 1fkxA 349 8.165 c.1.9.1 29018 1vflA 356 8.273 c.1.9.1 120041 2pgfA 371 10.42 1w1iE 357 11.03 c.1.9.1 109051 2bgnE 363 11.18 c.1.9.1 128492 1yy9A 624 11.35 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 124207,124208,124209,124210 2an1A 292 11.68 3b2vA 624 11.74 1nqlA 624 11.77 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 86033,86034,86035,86036 1qxlA 356 11.96 c.1.9.1 104644 1ivoA 622 12.02 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 76845,76846,76847,76848 1zgdA 312 13.36 1o12A 376 13.72 b.92.1.5,c.1.9.10 80758,80759 1pw5A 253 14.86 c.108.1.14 95199 1v9lA 421 15.17 c.2.1.7,c.58.1.1 113583,113584 1bkgA 385 15.22 c.67.1.1 34351 1dlaA 314 15.61 c.1.7.1 28690 5bj3A 385 15.81 c.67.1.1 100871 1ah4A 315 15.85 c.1.7.1 28684 1vhnA 318 16.54 c.1.4.1 100693 1bjwA 382 16.63 c.67.1.1 34349 5bj4A 385 16.72 c.67.1.1 100875 2d0iA 333 18.14 1wm0X 292 19.01 a.123.1.1 109404 1b5oA 385 19.45 c.67.1.1 90401 1b5pA 385 19.62 c.67.1.1 90403 1bxbA 387 20.76 c.1.15.3 29543 2adaA 352 22.48 c.1.9.1 29027 2fliA 220 23.44 c.1.2.2 133714 2o09A 189 23.92 2pz0A 252 24.56 2yxzA 311 24.81 2ghaA 382 26.43 2h1vA 310 27.55 1c9eA 306 28.39 c.92.1.1 35595 1uioA 349 28.68 c.1.9.1 29021 1uipA 349 28.77 c.1.9.1 29022 1f07A 321 28.91 c.1.16.3 59560 1dozA 309 29.47 c.92.1.1 35592 2hk6A 310 29.72 c.92.1.1 136550 1a4mA 349 30.12 c.1.9.1 29014 2ac2A 309 30.71 1prgA 270 31.06 a.123.1.1 19314 2hwqA 271 31.22 3buvA 326 31.32 2yyuA 246 31.42 1zgyA 272 31.57 a.123.1.1 125064 1wdkC 390 32.34 c.95.1.1,c.95.1.1 109258,109259 1knuA 274 32.67 a.123.1.1 77457 1kwgA 645 32.76 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 2q5sA 274 32.82 1nyxA 276 33.68 a.123.1.1 86431 2om9A 278 34.22 a.123.1.1 139142 2hfpA 282 34.58 a.123.1.1 136388 2a4aA 281 34.59 c.1.10.1 126150 2p4yA 277 34.66 1rdtD 284 34.83 a.123.1.1 111788 3prgA 278 35.17 a.123.1.1 19318 2r8cA 426 37.08 1ftrA 296 39.39 d.58.33.1,d.58.33.1 39485,39486 2dfaA 250 39.60 c.6.2.5 131469 2pl5A 366 40.88 1k74D 283 42.65 a.123.1.1 68252 2ob3A 330 43.18 1b6cB 342 43.19 d.144.1.7 41673 1op0A 234 43.66 b.47.1.2 104019 1fkwA 349 45.08 c.1.9.1 29019 1rypG 244 45.67 d.153.1.4 41938 1j9eA 147 47.39 c.23.5.1 62756 1op2A 234 47.43 b.47.1.2 104020 1vs1A 276 48.01 2qedA 258 48.69 2ehhA 294 48.97 2dk9A 118 49.51 1g0uF 248 49.80 d.153.1.4 41951 2iw1A 374 51.15 c.87.1.8 137738 1wylA 116 52.34 2iw2A 494 52.88 2i4jA 286 53.38 a.123.1.1 137049 3caoA 103 54.87 a.138.1.1 19661 2o4qA 331 57.75 2etjA 250 57.83 c.55.3.1 132360 1eywA 331 58.04 c.1.9.3 29057 1ptaA 327 58.50 c.1.9.3 29064 1dpmA 329 58.51 c.1.9.3 29062 1i0dA 332 58.74 c.1.9.3 61487 2o4mA 331 58.81 1ufvA 276 59.07 c.26.1.4 88487 1x0rA 249 59.63 c.47.1.10 121562 1jgmA 336 60.31 c.1.9.3 62953 2ohfA 396 63.13 2nvlA 250 63.15 1othA 321 63.19 c.78.1.1,c.78.1.1 35260,35261 1v8fA 276 63.64 c.26.1.4 100503 2v3uA 265 63.69 1i7iA 292 64.36 a.123.1.1 71125 2q3jA 309 65.87 2h1wA 310 66.44 3be7A 408 66.49 1pxtA 390 66.88 c.95.1.1,c.95.1.1 35904,35905 2qv6A 268 68.04 1ddxA 552 70.51 a.93.1.2,g.3.11.1 18732,44275 2ac4A 309 70.81 2amxA 376 71.56 c.1.9.1 127024 2c8jA 311 72.00 1xxxA 303 72.14 c.1.10.1 122433 1py5A 326 72.62 d.144.1.7 104389 1afwA 393 73.25 c.95.1.1,c.95.1.1 35900,35901 2a7nA 380 75.17 1a04A 215 75.19 a.4.6.2,c.23.1.1 16234,31089 1cvuA 552 75.26 a.93.1.2,g.3.11.1 18716,44259 1bxcA 387 75.62 c.1.15.3 29539 2zbtA 297 76.90 2cv4A 250 77.79 c.47.1.10 130837 2of7A 260 78.42 1lqaA 346 78.63 c.1.7.1 84674 2hpgA 327 78.78 2g7lA 243 79.59 a.4.1.9,a.121.1.1 134734,134735 2qr6A 393 80.57 1clkA 387 83.23 c.1.15.3 29438 2egxA 269 83.54 1p4cA 380 84.69 c.1.4.1 94100 2i7gA 376 87.53