# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 2.19e-14 1m65A 245 1.12e-13 c.6.3.1 84847 2yxoA 267 4.27e-12 2anuA 255 2.98e-10 c.6.3.1 127058 1v77A 212 0.2542 c.6.3.2 108402 2qahA 303 1.211 2q02A 272 2.082 2qulA 290 2.543 1o12A 376 3.107 b.92.1.5,c.1.9.10 80758,80759 2amxA 376 3.616 c.1.9.1 127024 2f6kA 307 4.394 c.1.9.15 133047 1vbjA 281 4.395 2ob3A 330 4.940 2vhlA 396 5.167 2gzxA 265 5.261 2ffiA 288 5.270 c.1.9.15 133385 3xis 387 5.344 1yixA 265 5.531 c.1.9.12 123371 2gwnA 452 5.876 3c86A 328 6.140 1w1iE 357 7.008 c.1.9.1 109051 2pgfA 371 7.050 1o0yA 260 7.196 c.1.10.1 80756 2eg6A 347 7.250 3buvA 326 8.968 3c6qA 311 9.179 1bf6A 291 9.304 c.1.9.3 29065 1zgdA 312 9.736 3ciwA 348 10.49 4xis 387 10.61 1a0dA 440 11.18 c.1.15.3 29533 1vc4A 254 11.26 c.1.2.4 100557 1qopA 268 11.37 c.1.2.4 28570 2fliA 220 11.47 c.1.2.2 133714 2d2jA 329 11.66 c.1.9.3 131175 1hw6A 278 11.72 c.1.7.1 61296 1k77A 260 11.82 c.1.15.5 72096 1muwA 386 12.66 c.1.15.3 79495 1vzwA 244 13.41 c.1.2.1 120553 1yxyA 234 13.51 c.1.2.5 124203 1h5yA 253 13.67 c.1.2.1 65638 1s1pA 331 13.80 c.1.7.1 98350 1xrtA 467 14.17 b.92.1.3,c.1.9.6 122258,122259 2hejA 323 15.68 1a4mA 349 15.72 c.1.9.1 29014 2pg3A 232 16.02 1ni5A 433 16.14 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1fkx 349 16.28 2nlyA 245 16.55 c.6.2.7 138364 1a0cA 438 16.98 c.1.15.3 29529 1onwA 390 17.55 b.92.1.7,c.1.9.13 87172,87173 1y0eA 223 18.01 c.1.2.5 116297 2a0nA 265 18.38 c.1.2.1 125961 2g0wA 296 18.98 c.1.15.4 134503 1vflA 356 19.12 c.1.9.1 120041 1xwyA 264 19.66 c.1.9.12 122411 1rd5A 262 20.11 c.1.2.4 111772 3cjpA 272 20.78 1us0A 316 20.92 c.1.7.1 99850 2bgsA 344 20.98 2qw5A 335 21.36 2hk0A 309 22.17 1j96A 323 23.09 c.1.7.1 71616 1yrrA 382 23.66 b.92.1.5,c.1.9.10 123935,123936 1hrkA 359 24.03 c.92.1.1 61228 3cnyA 301 24.06 1yacA 208 25.07 c.33.1.3 31757 1m7jA 484 25.59 b.92.1.6,b.92.1.6,c.1.9.11 78732,78733,78734 2hvmA 273 26.90 c.1.8.5 28985 1tv8A 340 27.14 c.1.28.3 107352 1dorA 311 27.45 c.1.4.1 28595 1igs 248 27.67 2gokA 429 28.56 2dztA 248 28.83 2h3hA 313 28.99 1usgA 346 29.23 c.93.1.1 99864 1gudA 288 29.61 c.93.1.1 83326 2v3gA 283 30.12 1vh7A 265 31.05 c.1.2.1 100646 2qvcA 313 31.45 1yx1A 264 31.59 c.1.15.7 124169 2qv5A 261 32.01 2qs8A 418 32.18 2liv 344 32.30 1frb 315 32.65 1a53A 247 32.65 c.1.2.4 28564 2vc7A 314 32.82 1ads 315 32.88 2ftwA 521 34.83 b.92.1.3,c.1.9.6 134083,134084 2yx0A 342 34.88 1m32A 366 35.56 c.67.1.3 78508 2bp1A 360 35.72 1eqcA 394 36.54 c.1.8.3 28811 1qwgA 251 37.11 c.1.27.1 96473 2agtA 319 37.39 1hdoA 206 38.12 c.2.1.2 60965 2nqlA 388 38.49 1amy 403 39.85 1lwjA 441 40.90 b.71.1.1,c.1.8.1 74303,74304 2qt3A 403 41.07 1zuaX 317 41.76 2ao0A 324 43.33 1cb0A 283 43.48 c.56.2.1 33790 2h1vA 310 43.69 1i0dA 332 44.05 c.1.9.3 61487 1j2rA 199 44.92 c.33.1.3 90788 1w8sA 263 47.46 c.1.10.1 120744 1f75A 249 47.58 c.101.1.1 59662 1ajsA 412 47.65 c.67.1.1 34276 3b5vA 248 48.05 2gouA 365 48.41 2b34A 199 48.49 1phpA 394 48.88 c.86.1.1 35452 2hx1A 284 48.97 2gwgA 350 49.48 c.1.9.15 135805 1pyfA 312 50.85 c.1.7.1 95334 1v93A 296 51.35 c.1.23.1 100532 1mi3A 322 51.41 c.1.7.1 91274 1thfD 253 52.28 c.1.2.1 28535 1nbaA 264 52.73 c.33.1.3 31753 1h1yA 228 52.80 c.1.2.2 76506 1g0cA 364 53.07 c.1.8.3 60165 2vesA 299 53.62 1b5tA 275 53.63 c.1.23.1 29676 2dvtA 327 53.71 c.1.9.15 131793 1z15A 344 54.23 1jubA 311 55.09 c.1.4.1 90908 1xngA 268 55.61 c.26.2.1 122186 1w7lA 422 55.74 c.67.1.1 109226 2rjoA 332 57.40 1kqzA 273 57.83 c.1.8.5 68844 1a53 247 57.90 2uy2A 294 57.91 1pz1A 333 58.16 c.1.7.1 95390 2j13A 247 58.28 c.6.2.3 137934 3canA 182 58.34 2icsA 379 59.19 b.92.1.8,c.1.9.14 137241,137242 1n7kA 234 60.57 c.1.10.1 85374 2d59A 144 61.18 c.2.1.8 131266 1bjwA 382 62.21 c.67.1.1 34349 2a1fA 247 62.34 c.73.1.3 125991 1vbuA 328 63.13 c.1.8.3 119963 2bneA 241 64.15 c.73.1.3 128824 1q6oA 216 64.80 c.1.2.3 95986 7taa 478 65.11 2ojpA 292 65.76 1gkpA 458 66.01 b.92.1.3,c.1.9.6 70231,70232 1kcxA 518 67.02 b.92.1.3,c.1.9.6 90953,90954 1v4vA 376 67.44 c.87.1.3 100313 2nxfA 322 67.51 2rbkA 261 67.59 1tqjA 230 68.66 c.1.2.2 107228 1exbA 332 68.73 c.1.7.1 28666 1b5pA 385 69.42 c.67.1.1 90403 2dorA 311 70.48 c.1.4.1 28593 1ra0A 430 70.51 b.92.1.2,c.1.9.5 111756,111757 1xi3A 215 70.63 c.1.3.1 109601 1nf8A 207 70.82 c.33.1.3 85630 2r8rA 228 72.88 2ac2A 309 72.93 1nf9A 207 72.93 c.33.1.3 85631 2ohwA 133 73.80 1rpxA 230 74.49 c.1.2.2 28536 1w0mA 226 74.98 c.1.1.1 109027 1mxgA 435 75.50 b.71.1.1,c.1.8.1 85193,85194 1ur3M 319 76.02 c.1.7.1 99806 1zzmA 259 76.06 c.1.9.12 125911 2j6vA 301 76.19 1tjyA 316 78.27 c.93.1.1 107062 1qtwA 285 78.93 c.1.15.1 29392 1q1gA 276 79.64 c.56.2.1 95574 3brsA 289 80.47 1jq5A 370 80.57 e.22.1.2 67084 1im5A 180 80.72 c.33.1.3 66211 3c8nA 356 81.27 2q09A 416 81.42 1ceo 343 82.09 2abbA 364 82.60 c.1.4.1 126517 1zsxA 347 82.72 1ivnA 190 83.24 c.23.10.5 83719 2d2rA 245 83.40 2g3fA 421 83.65 2p10A 286 83.76 1n82A 331 83.79 c.1.8.3 91703 1ojxA 263 87.18 c.1.10.1 93164 2akoA 251 88.21 c.73.1.3 126923 1v0lA 313 89.26 c.1.8.3 108207 1pswA 348 89.33 c.87.1.7 88287