# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 1.29e-13 1m65A 245 1.23e-12 c.6.3.1 84847 2yxoA 267 5.79e-11 2anuA 255 5.66e-09 c.6.3.1 127058 1v77A 212 0.3559 c.6.3.2 108402 2qulA 290 1.410 2q02A 272 2.016 2vhlA 396 3.121 1zgdA 312 3.224 2ffiA 288 3.435 c.1.9.15 133385 2qahA 303 3.453 2amxA 376 4.072 c.1.9.1 127024 1k77A 260 4.663 c.1.15.5 72096 3xis 387 5.032 2f6kA 307 5.098 c.1.9.15 133047 1vbjA 281 5.498 1bf6A 291 5.758 c.1.9.3 29065 2pgfA 371 5.815 1w1iE 357 5.988 c.1.9.1 109051 1o12A 376 5.992 b.92.1.5,c.1.9.10 80758,80759 1vflA 356 7.933 c.1.9.1 120041 1fkx 349 8.834 1yrrA 382 9.312 b.92.1.5,c.1.9.10 123935,123936 1xrtA 467 9.595 b.92.1.3,c.1.9.6 122258,122259 4xis 387 9.773 2gwnA 452 9.924 2ob3A 330 10.10 1muwA 386 10.21 c.1.15.3 79495 3ciwA 348 10.53 1a4mA 349 10.54 c.1.9.1 29014 1yixA 265 10.83 c.1.9.12 123371 3buvA 326 10.92 1hw6A 278 10.94 c.1.7.1 61296 3c86A 328 11.20 2bgsA 344 11.50 2fliA 220 11.56 c.1.2.2 133714 2j6vA 301 12.38 1vc4A 254 13.44 c.1.2.4 100557 2hejA 323 13.61 3cnyA 301 14.37 1frb 315 15.09 2hk0A 309 15.63 1s1pA 331 15.64 c.1.7.1 98350 1us0A 316 15.69 c.1.7.1 99850 1w7lA 422 15.97 c.67.1.1 109226 1j96A 323 16.03 c.1.7.1 71616 2g0wA 296 16.49 c.1.15.4 134503 2qv5A 261 17.18 2gzxA 265 17.21 1kcxA 518 17.98 b.92.1.3,c.1.9.6 90953,90954 1rd5A 262 20.61 c.1.2.4 111772 1qopA 268 20.95 c.1.2.4 28570 1h5yA 253 21.35 c.1.2.1 65638 1zuaX 317 22.95 2vc7A 314 24.54 1a0dA 440 24.76 c.1.15.3 29533 2qw5A 335 25.11 1lwjA 441 25.26 b.71.1.1,c.1.8.1 74303,74304 2qs8A 418 25.58 1ads 315 25.76 1xwyA 264 26.19 c.1.9.12 122411 2a0nA 265 26.99 c.1.2.1 125961 1yxyA 234 27.21 c.1.2.5 124203 2bp1A 360 28.24 1yacA 208 28.33 c.33.1.3 31757 2d2jA 329 28.67 c.1.9.3 131175 2gokA 429 29.19 1cb0A 283 29.80 c.56.2.1 33790 2ftwA 521 29.93 b.92.1.3,c.1.9.6 134083,134084 2vesA 299 31.60 2ao0A 324 32.20 1v5xA 203 32.47 c.1.2.4 100377 1a0cA 438 32.51 c.1.15.3 29529 1o0yA 260 32.53 c.1.10.1 80756 2egzA 219 33.09 1mi3A 322 33.26 c.1.7.1 91274 1igs 248 33.47 1qtwA 285 34.86 c.1.15.1 29392 2d59A 144 35.21 c.2.1.8 131266 1i0dA 332 35.49 c.1.9.3 61487 1pz1A 333 36.48 c.1.7.1 95390 1ni5A 433 36.58 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1usgA 346 36.72 c.93.1.1 99864 1q6oA 216 37.08 c.1.2.3 95986 1m7jA 484 37.31 b.92.1.6,b.92.1.6,c.1.9.11 78732,78733,78734 2agtA 319 37.50 1hrkA 359 37.89 c.92.1.1 61228 1b5tA 275 38.80 c.1.23.1 29676 1gveA 327 39.32 c.1.7.1 70597 2b34A 199 39.62 2q09A 416 39.71 1v93A 296 39.76 c.1.23.1 100532 2v3gA 283 40.23 1tv8A 340 40.97 c.1.28.3 107352 3cjpA 272 41.00 1gkrA 458 41.11 b.92.1.3,c.1.9.6 70251,70252 3c6qA 311 41.23 1qwgA 251 41.36 c.1.27.1 96473 1qwkA 317 41.69 c.1.7.1 96482 1yx1A 264 41.95 c.1.15.7 124169 1f75A 249 43.18 c.101.1.1 59662 2dztA 248 45.21 2nlyA 245 45.78 c.6.2.7 138364 1vh7A 265 45.99 c.1.2.1 100646 1vzwA 244 47.66 c.1.2.1 120553 2eg6A 347 47.96 2ac7A 235 48.19 c.56.2.1 126543 2a1fA 247 48.62 c.73.1.3 125991 2liv 344 48.64 2j13A 247 49.35 c.6.2.3 137934 1a53A 247 49.44 c.1.2.4 28564 1ceo 343 50.08 1tqjA 230 51.06 c.1.2.2 107228 1y0eA 223 51.30 c.1.2.5 116297 1zsxA 347 51.87 1j2rA 199 52.25 c.33.1.3 90788 2bneA 241 52.43 c.73.1.3 128824 2gt1A 326 53.24 1dorA 311 53.99 c.1.4.1 28595 3canA 182 55.32 2nqlA 388 55.82 1exbA 332 56.36 c.1.7.1 28666 1kfcA 268 56.67 c.1.2.4 77371 1vi2A 300 58.39 c.2.1.7,c.58.1.5 100726,100727 1gudA 288 59.26 c.93.1.1 83326 1g0cA 364 59.32 c.1.8.3 60165 3b9oA 440 60.94 1w8sA 263 61.84 c.1.10.1 120744 1xngA 268 62.20 c.26.2.1 122186 2qt3A 403 63.55 2icsA 379 63.78 b.92.1.8,c.1.9.14 137241,137242 2akoA 251 65.23 c.73.1.3 126923 1amy 403 66.55 1lqaA 346 66.62 c.1.7.1 84674 1a53 247 67.61 1ny1A 240 70.00 c.6.2.3 86395 1rpxA 230 70.01 c.1.2.2 28536 3be7A 408 70.73 1odkA 235 72.26 c.56.2.1 86863 1xbyA 216 73.50 c.1.2.3 121846 2g3fA 421 73.52 1gkpA 458 75.18 b.92.1.3,c.1.9.6 70231,70232 1q1gA 276 75.55 c.56.2.1 95574 1tjyA 316 75.57 c.93.1.1 107062 1pyfA 312 76.33 c.1.7.1 95334 1nf8A 207 76.45 c.33.1.3 85630 1nf9A 207 76.56 c.33.1.3 85631 2pg3A 232 77.58 1ezwA 349 77.61 c.1.16.3 29558 1ur3M 319 78.17 c.1.7.1 99806 2rbkA 261 78.24 1z15A 344 78.37 1tqxA 227 78.75 c.1.2.2 112614 2puzA 419 79.23 2hx1A 284 79.27 3c8nA 356 79.71 1tltA 319 79.97 c.2.1.3,d.81.1.5 107135,107136 1i60A 278 81.62 c.1.15.4 71118 2iw0A 254 82.26 c.6.2.3 137737 2tysA 268 82.55 c.1.2.4 28572 1m5wA 243 83.24 c.1.24.1 84836 1ybdA 239 83.92 c.73.1.3 122884 1iukA 140 84.10 c.2.1.8 83712 1thfD 253 84.73 c.1.2.1 28535 1w85A 368 84.79 c.36.1.11 114335 1vp4A 425 85.04 c.67.1.1 113935 1geqA 248 85.68 c.1.2.4 28589 1v4vA 376 87.21 c.87.1.3 100313 1m32A 366 87.75 c.67.1.3 78508 1bjwA 382 87.82 c.67.1.1 34349 1lucB 324 88.72 c.1.16.1 29548 1n7kA 234 88.94 c.1.10.1 85374