# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 3.30e-16 1m65A 245 5.61e-15 c.6.3.1 84847 2yxoA 267 3.83e-13 2anuA 255 1.52e-11 c.6.3.1 127058 1v77A 212 0.1919 c.6.3.2 108402 2qulA 290 0.5757 2q02A 272 0.8322 1vbjA 281 2.027 3xis 387 2.222 2qahA 303 3.103 2vhlA 396 4.132 2qw5A 335 4.133 4xis 387 4.496 2ffiA 288 4.598 c.1.9.15 133385 2g0wA 296 4.845 c.1.15.4 134503 1h5yA 253 5.672 c.1.2.1 65638 2f6kA 307 5.886 c.1.9.15 133047 1muwA 386 6.611 c.1.15.3 79495 1zgdA 312 7.287 3c86A 328 7.507 2ob3A 330 7.620 2gzxA 265 9.104 1a0dA 440 9.228 c.1.15.3 29533 2hejA 323 9.312 1o12A 376 9.542 b.92.1.5,c.1.9.10 80758,80759 1j96A 323 10.16 c.1.7.1 71616 1a0cA 438 10.50 c.1.15.3 29529 1yixA 265 10.98 c.1.9.12 123371 3cnyA 301 10.99 1w1iE 357 11.07 c.1.9.1 109051 1us0A 316 11.29 c.1.7.1 99850 2fliA 220 11.52 c.1.2.2 133714 1qopA 268 11.70 c.1.2.4 28570 1o0yA 260 12.15 c.1.10.1 80756 1hw6A 278 12.24 c.1.7.1 61296 2amxA 376 12.37 c.1.9.1 127024 2v3gA 283 12.92 1vzwA 244 13.23 c.1.2.1 120553 1s1pA 331 13.47 c.1.7.1 98350 1tv8A 340 14.04 c.1.28.3 107352 2bgsA 344 14.84 1yacA 208 14.97 c.33.1.3 31757 2gwnA 452 15.07 1vh7A 265 15.15 c.1.2.1 100646 2pg3A 232 15.44 2pgfA 371 15.56 1frb 315 15.66 1k77A 260 16.72 c.1.15.5 72096 1vc4A 254 17.99 c.1.2.4 100557 1vflA 356 18.22 c.1.9.1 120041 1bf6A 291 18.26 c.1.9.3 29065 2ftwA 521 18.70 b.92.1.3,c.1.9.6 134083,134084 2a0nA 265 19.73 c.1.2.1 125961 2d2jA 329 20.25 c.1.9.3 131175 1mi3A 322 20.31 c.1.7.1 91274 2hx1A 284 20.34 2eg6A 347 20.39 1qtwA 285 20.69 c.1.15.1 29392 1fkx 349 20.84 3ciwA 348 21.80 3c6qA 311 23.00 2qs8A 418 24.26 2agtA 319 24.65 1g0cA 364 25.28 c.1.8.3 60165 2vc7A 314 25.56 1ads 315 26.32 2nlyA 245 26.79 c.6.2.7 138364 2hk0A 309 26.85 1yrrA 382 28.28 b.92.1.5,c.1.9.10 123935,123936 2dztA 248 28.68 2akoA 251 28.71 c.73.1.3 126923 1a4mA 349 30.41 c.1.9.1 29014 1kcxA 518 30.80 b.92.1.3,c.1.9.6 90953,90954 2b34A 199 31.40 1qwgA 251 31.55 c.1.27.1 96473 1dorA 311 31.73 c.1.4.1 28595 1xwyA 264 31.77 c.1.9.12 122411 2icsA 379 32.01 b.92.1.8,c.1.9.14 137241,137242 2dorA 311 32.74 c.1.4.1 28593 1y0eA 223 33.03 c.1.2.5 116297 1pyfA 312 33.16 c.1.7.1 95334 1yxyA 234 33.96 c.1.2.5 124203 1rd5A 262 34.60 c.1.2.4 111772 1w7lA 422 35.44 c.67.1.1 109226 2gokA 429 35.87 2d59A 144 35.89 c.2.1.8 131266 1tvlA 454 36.70 c.1.16.4 107366 2qv5A 261 36.87 1xrtA 467 37.12 b.92.1.3,c.1.9.6 122258,122259 1pz1A 333 37.36 c.1.7.1 95390 1ni5A 433 37.53 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2nqlA 388 37.71 1m32A 366 38.12 c.67.1.3 78508 3c8nA 356 38.48 1qwkA 317 38.50 c.1.7.1 96482 1eqcA 394 38.97 c.1.8.3 28811 1f75A 249 41.57 c.101.1.1 59662 1gudA 288 42.92 c.93.1.1 83326 2ac7A 235 43.11 c.56.2.1 126543 2bneA 241 43.36 c.73.1.3 128824 1i0dA 332 44.28 c.1.9.3 61487 2bp1A 360 45.79 1ojxA 263 46.28 c.1.10.1 93164 1bjnA 360 47.06 c.67.1.4 34469 2citA 282 47.60 c.1.8.3 130499 3bijA 285 48.30 1eg5A 384 48.98 c.67.1.3 34429 2a1fA 247 49.42 c.73.1.3 125991 2vesA 299 49.63 1xngA 268 50.10 c.26.2.1 122186 3b9oA 440 50.52 1usgA 346 50.66 c.93.1.1 99864 1igs 248 51.57 1z15A 344 52.76 1vi2A 300 53.26 c.2.1.7,c.58.1.5 100726,100727 2hmaA 376 53.92 1tjyA 316 55.81 c.93.1.1 107062 1lucB 324 56.29 c.1.16.1 29548 1bjwA 382 56.32 c.67.1.1 34349 1ynpA 317 57.68 1ybdA 239 57.71 c.73.1.3 122884 1thfD 253 57.84 c.1.2.1 28535 2liv 344 58.18 1nbaA 264 58.59 c.33.1.3 31753 1j2rA 199 59.44 c.33.1.3 90788 1yc5A 246 59.44 c.31.1.5 122910 1v5xA 203 60.91 c.1.2.4 100377 1wr8A 231 61.74 c.108.1.10 114836 2fjtA 182 64.41 2nxfA 322 64.86 1w8sA 263 65.11 c.1.10.1 120744 2ho4A 259 65.81 1amy 403 65.83 1rpxA 230 65.91 c.1.2.2 28536 1gveA 327 65.91 c.1.7.1 70597 1zsxA 347 66.74 1j54A 186 67.10 c.55.3.5 77077 1jubA 311 67.13 c.1.4.1 90908 1zuaX 317 67.32 1v4vA 376 67.48 c.87.1.3 100313 2ao0A 324 69.19 3cu2A 237 69.44 1yx1A 264 69.50 c.1.15.7 124169 1q1rA 431 69.65 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1q1gA 276 71.82 c.56.2.1 95574 1q6oA 216 71.89 c.1.2.3 95986 1nf9A 207 73.10 c.33.1.3 85631 2g3fA 421 73.95 1b5tA 275 74.29 c.1.23.1 29676 1tltA 319 74.38 c.2.1.3,d.81.1.5 107135,107136 1uok 558 74.65 1cb0A 283 75.51 c.56.2.1 33790 2iw0A 254 75.85 c.6.2.3 137737 1ur3M 319 76.01 c.1.7.1 99806 1vp4A 425 76.51 c.67.1.1 113935 1a53A 247 76.65 c.1.2.4 28564 2qvcA 313 77.03 2p10A 286 77.19 1z6gA 218 77.23 1k4iA 233 78.33 d.115.1.2 72056 1lwjA 441 78.50 b.71.1.1,c.1.8.1 74303,74304 1ohvA 472 78.82 c.67.1.4 93031 2rbkA 261 78.82 1phpA 394 79.02 c.86.1.1 35452 1nf8A 207 79.66 c.33.1.3 85630 3c8uA 208 79.76 1zjjA 263 79.78 1m7jA 484 80.94 b.92.1.6,b.92.1.6,c.1.9.11 78732,78733,78734 1mxgA 435 81.04 b.71.1.1,c.1.8.1 85193,85194 1geqA 248 81.74 c.1.2.4 28589 3canA 182 82.99 1jkxA 212 83.30 c.65.1.1 66813 1w8gA 234 83.47 2j6vA 301 84.35 1tqjA 230 84.77 c.1.2.2 107228 2hvmA 273 85.26 c.1.8.5 28985 1ra0A 430 87.94 b.92.1.2,c.1.9.5 111756,111757 1ht6A 405 89.10 b.71.1.1,c.1.8.1 83629,83630 1iirA 415 89.38 c.87.1.5 62453 2hfsA 332 89.64 1avaA 403 89.99 b.71.1.1,c.1.8.1 27797,28784