# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 1.52e-14 1m65A 245 1.68e-13 c.6.3.1 84847 2yxoA 267 9.60e-12 2anuA 255 3.55e-10 c.6.3.1 127058 1v77A 212 0.3430 c.6.3.2 108402 2qulA 290 1.013 2q02A 272 1.104 1vbjA 281 2.165 2qahA 303 2.997 3xis 387 3.191 2vhlA 396 4.268 4xis 387 4.713 1muwA 386 5.248 c.1.15.3 79495 2f6kA 307 5.632 c.1.9.15 133047 2ffiA 288 5.797 c.1.9.15 133385 2qw5A 335 6.284 1a0dA 440 7.566 c.1.15.3 29533 2g0wA 296 7.595 c.1.15.4 134503 2gzxA 265 8.267 2ob3A 330 8.538 1zgdA 312 8.902 3c86A 328 9.411 1yixA 265 9.548 c.1.9.12 123371 1h5yA 253 9.639 c.1.2.1 65638 1j96A 323 9.651 c.1.7.1 71616 1a0cA 438 10.00 c.1.15.3 29529 2hejA 323 10.62 3cnyA 301 11.21 2amxA 376 11.22 c.1.9.1 127024 1us0A 316 11.55 c.1.7.1 99850 1yacA 208 12.09 c.33.1.3 31757 1o0yA 260 12.14 c.1.10.1 80756 1o12A 376 12.17 b.92.1.5,c.1.9.10 80758,80759 1s1pA 331 12.35 c.1.7.1 98350 1w1iE 357 13.33 c.1.9.1 109051 1frb 315 13.59 1qopA 268 13.74 c.1.2.4 28570 1tv8A 340 14.16 c.1.28.3 107352 2gwnA 452 14.41 1hw6A 278 14.60 c.1.7.1 61296 2pg3A 232 15.18 1vzwA 244 15.18 c.1.2.1 120553 2fliA 220 15.55 c.1.2.2 133714 3ciwA 348 15.88 1k77A 260 16.12 c.1.15.5 72096 2v3gA 283 16.30 2eg6A 347 16.34 1vc4A 254 16.42 c.1.2.4 100557 2ftwA 521 16.90 b.92.1.3,c.1.9.6 134083,134084 1qtwA 285 17.08 c.1.15.1 29392 2pgfA 371 17.84 2bgsA 344 18.09 1mi3A 322 20.10 c.1.7.1 91274 2qs8A 418 20.86 1vflA 356 21.04 c.1.9.1 120041 1vh7A 265 21.26 c.1.2.1 100646 2agtA 319 21.73 1ads 315 22.52 1rd5A 262 22.78 c.1.2.4 111772 2hx1A 284 23.21 2d2jA 329 23.26 c.1.9.3 131175 2a0nA 265 23.30 c.1.2.1 125961 1xwyA 264 24.53 c.1.9.12 122411 1bf6A 291 25.23 c.1.9.3 29065 1y0eA 223 27.60 c.1.2.5 116297 3c6qA 311 28.44 2vc7A 314 28.71 1yrrA 382 28.96 b.92.1.5,c.1.9.10 123935,123936 2b34A 199 29.16 2hk0A 309 30.07 1a4mA 349 30.07 c.1.9.1 29014 2nlyA 245 30.52 c.6.2.7 138364 1kcxA 518 31.00 b.92.1.3,c.1.9.6 90953,90954 2icsA 379 31.95 b.92.1.8,c.1.9.14 137241,137242 2gokA 429 33.02 1xrtA 467 33.28 b.92.1.3,c.1.9.6 122258,122259 1fkx 349 33.70 1ni5A 433 34.33 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2bp1A 360 35.04 1qwgA 251 35.95 c.1.27.1 96473 1qwkA 317 36.25 c.1.7.1 96482 2dztA 248 36.99 1dorA 311 37.22 c.1.4.1 28595 1w7lA 422 37.49 c.67.1.1 109226 1pz1A 333 37.82 c.1.7.1 95390 1g0cA 364 38.44 c.1.8.3 60165 2qv5A 261 38.51 2dorA 311 38.93 c.1.4.1 28593 1tvlA 454 39.42 c.1.16.4 107366 1pyfA 312 39.47 c.1.7.1 95334 1yxyA 234 39.61 c.1.2.5 124203 2akoA 251 40.25 c.73.1.3 126923 1ojxA 263 40.73 c.1.10.1 93164 3bijA 285 41.18 1f75A 249 41.67 c.101.1.1 59662 2nqlA 388 42.24 1m32A 366 44.01 c.67.1.3 78508 1nbaA 264 44.39 c.33.1.3 31753 1gudA 288 47.10 c.93.1.1 83326 1igs 248 47.38 1i0dA 332 47.54 c.1.9.3 61487 3b9oA 440 48.04 3c8nA 356 49.08 1eqcA 394 49.08 c.1.8.3 28811 1usgA 346 49.22 c.93.1.1 99864 2d59A 144 49.74 c.2.1.8 131266 1zsxA 347 49.76 1m7jA 484 49.97 b.92.1.6,b.92.1.6,c.1.9.11 78732,78733,78734 1bjwA 382 50.58 c.67.1.1 34349 1bjnA 360 50.71 c.67.1.4 34469 2bneA 241 51.97 c.73.1.3 128824 1zuaX 317 53.44 2vesA 299 53.62 1w8sA 263 54.14 c.1.10.1 120744 1yc5A 246 54.33 c.31.1.5 122910 2liv 344 55.59 1v4vA 376 55.74 c.87.1.3 100313 1ynpA 317 56.21 2ao0A 324 56.23 1j54A 186 56.34 c.55.3.5 77077 1j2rA 199 56.61 c.33.1.3 90788 1z15A 344 56.76 2ac7A 235 57.31 c.56.2.1 126543 2ho4A 259 57.35 1gveA 327 57.64 c.1.7.1 70597 1thfD 253 57.90 c.1.2.1 28535 2a1fA 247 59.28 c.73.1.3 125991 1nf8A 207 59.69 c.33.1.3 85630 2citA 282 60.78 c.1.8.3 130499 1vi2A 300 61.28 c.2.1.7,c.58.1.5 100726,100727 2rbkA 261 63.13 1tjyA 316 63.33 c.93.1.1 107062 1xngA 268 63.33 c.26.2.1 122186 2qvcA 313 63.45 1nf9A 207 64.25 c.33.1.3 85631 1zjjA 263 64.38 1b5tA 275 64.61 c.1.23.1 29676 1yx1A 264 65.05 c.1.15.7 124169 2nxfA 322 65.32 1rpxA 230 65.40 c.1.2.2 28536 2dvtA 327 65.70 c.1.9.15 131793 1wr8A 231 66.40 c.108.1.10 114836 1uok 558 67.43 2h3hA 313 68.45 1korA 400 69.57 c.26.2.1,d.210.1.1 72824,72825 1lwjA 441 72.21 b.71.1.1,c.1.8.1 74303,74304 2p10A 286 72.31 1jubA 311 72.42 c.1.4.1 90908 2qt3A 403 73.00 1ybdA 239 74.05 c.73.1.3 122884 1lucB 324 77.24 c.1.16.1 29548 1ur3M 319 78.14 c.1.7.1 99806 1eg5A 384 78.71 c.67.1.3 34429 2gwgA 350 79.60 c.1.9.15 135805 1onxA 390 79.69 b.92.1.7,c.1.9.13 87176,87177 2yx0A 342 80.36 1cb0A 283 81.07 c.56.2.1 33790 1mxgA 435 81.73 b.71.1.1,c.1.8.1 85193,85194 1v5xA 203 82.39 c.1.2.4 100377 1iirA 415 82.61 c.87.1.5 62453 1amy 403 83.95 1im5A 180 84.81 c.33.1.3 66211 1phpA 394 85.26 c.86.1.1 35452 1gkpA 458 85.87 b.92.1.3,c.1.9.6 70231,70232 1q6oA 216 85.92 c.1.2.3 95986 1m2kA 249 87.44 c.31.1.5 84754 1tqjA 230 87.80 c.1.2.2 107228 1v0lA 313 88.34 c.1.8.3 108207 1v93A 296 88.40 c.1.23.1 100532 1vp4A 425 88.59 c.67.1.1 113935 2iw0A 254 89.44 c.6.2.3 137737 1ajsA 412 89.50 c.67.1.1 34276