# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 2.42e-15 1m65A 245 2.42e-14 c.6.3.1 84847 2yxoA 267 1.85e-12 2anuA 255 7.17e-11 c.6.3.1 127058 1v77A 212 0.1953 c.6.3.2 108402 2qulA 290 0.7953 2q02A 272 1.130 1vbjA 281 2.153 2qahA 303 2.511 2vhlA 396 3.079 3xis 387 3.710 2ffiA 288 3.814 c.1.9.15 133385 2f6kA 307 3.861 c.1.9.15 133047 4xis 387 5.004 2qw5A 335 5.319 2g0wA 296 6.062 c.1.15.4 134503 1muwA 386 6.471 c.1.15.3 79495 1a0dA 440 7.383 c.1.15.3 29533 1o12A 376 7.467 b.92.1.5,c.1.9.10 80758,80759 2ob3A 330 7.486 3c86A 328 7.624 2gzxA 265 7.997 1h5yA 253 8.463 c.1.2.1 65638 1yixA 265 8.746 c.1.9.12 123371 1a0cA 438 9.316 c.1.15.3 29529 1tv8A 340 10.17 c.1.28.3 107352 1zgdA 312 10.36 1j96A 323 10.37 c.1.7.1 71616 3cnyA 301 10.49 2hejA 323 11.45 2qs8A 418 11.54 2amxA 376 11.70 c.1.9.1 127024 2pg3A 232 12.15 2gwnA 452 12.33 1us0A 316 12.50 c.1.7.1 99850 1vzwA 244 12.57 c.1.2.1 120553 1yacA 208 12.59 c.33.1.3 31757 1qtwA 285 12.61 c.1.15.1 29392 2ftwA 521 12.64 b.92.1.3,c.1.9.6 134083,134084 1o0yA 260 13.07 c.1.10.1 80756 1qopA 268 13.12 c.1.2.4 28570 1w1iE 357 13.23 c.1.9.1 109051 1s1pA 331 13.71 c.1.7.1 98350 2fliA 220 15.73 c.1.2.2 133714 2eg6A 347 15.90 2v3gA 283 16.89 1y0eA 223 17.49 c.1.2.5 116297 1hw6A 278 17.62 c.1.7.1 61296 1bf6A 291 17.65 c.1.9.3 29065 1frb 315 18.07 2d2jA 329 18.49 c.1.9.3 131175 2icsA 379 18.56 b.92.1.8,c.1.9.14 137241,137242 1vc4A 254 18.89 c.1.2.4 100557 1vflA 356 19.13 c.1.9.1 120041 1k77A 260 19.41 c.1.15.5 72096 1vh7A 265 19.59 c.1.2.1 100646 2a0nA 265 19.63 c.1.2.1 125961 2hx1A 284 19.78 2bgsA 344 19.99 2pgfA 371 20.13 3ciwA 348 22.23 1xwyA 264 22.58 c.1.9.12 122411 2gokA 429 22.59 1yrrA 382 22.95 b.92.1.5,c.1.9.10 123935,123936 1rd5A 262 23.11 c.1.2.4 111772 1xrtA 467 24.54 b.92.1.3,c.1.9.6 122258,122259 2b34A 199 25.01 3c6qA 311 25.60 1dorA 311 25.81 c.1.4.1 28595 1a4mA 349 26.12 c.1.9.1 29014 1ni5A 433 26.88 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 3bijA 285 27.75 2nlyA 245 28.10 c.6.2.7 138364 2vc7A 314 28.29 1ads 315 28.87 1fkx 349 29.40 1mi3A 322 29.75 c.1.7.1 91274 1qwgA 251 30.02 c.1.27.1 96473 2dorA 311 30.73 c.1.4.1 28593 1g0cA 364 31.18 c.1.8.3 60165 1kcxA 518 31.33 b.92.1.3,c.1.9.6 90953,90954 1yxyA 234 31.86 c.1.2.5 124203 2akoA 251 32.29 c.73.1.3 126923 2nqlA 388 32.82 2agtA 319 33.42 2hk0A 309 35.62 2qv5A 261 36.11 1gudA 288 40.01 c.93.1.1 83326 1m32A 366 40.10 c.67.1.3 78508 2bneA 241 40.62 c.73.1.3 128824 1igs 248 40.82 1i0dA 332 40.86 c.1.9.3 61487 1ojxA 263 41.18 c.1.10.1 93164 1tvlA 454 41.40 c.1.16.4 107366 2dztA 248 42.09 2d59A 144 42.39 c.2.1.8 131266 1w7lA 422 42.58 c.67.1.1 109226 2bp1A 360 42.77 1nbaA 264 43.38 c.33.1.3 31753 1bjwA 382 44.46 c.67.1.1 34349 1pz1A 333 44.74 c.1.7.1 95390 2ho4A 259 45.35 1pyfA 312 46.24 c.1.7.1 95334 1yc5A 246 47.32 c.31.1.5 122910 1v4vA 376 47.41 c.87.1.3 100313 1f75A 249 48.31 c.101.1.1 59662 1w8sA 263 48.31 c.1.10.1 120744 2a1fA 247 48.58 c.73.1.3 125991 3c8nA 356 48.95 1m7jA 484 49.85 b.92.1.6,b.92.1.6,c.1.9.11 78732,78733,78734 1j54A 186 50.91 c.55.3.5 77077 1usgA 346 51.68 c.93.1.1 99864 1xngA 268 52.03 c.26.2.1 122186 2ac7A 235 52.42 c.56.2.1 126543 1eqcA 394 52.54 c.1.8.3 28811 1ybdA 239 53.54 c.73.1.3 122884 1bjnA 360 53.57 c.67.1.4 34469 1thfD 253 54.45 c.1.2.1 28535 2nxfA 322 55.04 1m2kA 249 55.59 c.31.1.5 84754 2vesA 299 56.30 1zuaX 317 57.11 1mxgA 435 57.53 b.71.1.1,c.1.8.1 85193,85194 1nf9A 207 59.14 c.33.1.3 85631 1wr8A 231 59.16 c.108.1.10 114836 1j2rA 199 59.20 c.33.1.3 90788 1yx1A 264 59.42 c.1.15.7 124169 1vi2A 300 59.49 c.2.1.7,c.58.1.5 100726,100727 1amy 403 59.60 1nf8A 207 59.75 c.33.1.3 85630 1qwkA 317 59.78 c.1.7.1 96482 3b9oA 440 60.57 2ao0A 324 63.35 1tjyA 316 64.56 c.93.1.1 107062 1b5tA 275 64.58 c.1.23.1 29676 1zjjA 263 64.95 1zsxA 347 65.07 2rbkA 261 65.55 1ynpA 317 65.55 1v5xA 203 65.62 c.1.2.4 100377 2gwgA 350 66.23 c.1.9.15 135805 2citA 282 66.29 c.1.8.3 130499 1jubA 311 68.64 c.1.4.1 90908 2dvtA 327 68.70 c.1.9.15 131793 2iw0A 254 69.81 c.6.2.3 137737 1lucB 324 69.88 c.1.16.1 29548 1uok 558 70.38 1eg5A 384 70.97 c.67.1.3 34429 1gveA 327 71.00 c.1.7.1 70597 2h3hA 313 72.36 1ur3M 319 74.00 c.1.7.1 99806 1j9lA 247 75.44 c.106.1.1 62762 1hdoA 206 75.50 c.2.1.2 60965 1q1gA 276 75.71 c.56.2.1 95574 7taa 478 75.83 1ra0A 430 76.66 b.92.1.2,c.1.9.5 111756,111757 2liv 344 77.20 1v93A 296 77.57 c.1.23.1 100532 1cb0A 283 79.03 c.56.2.1 33790 2qvcA 313 79.47 1ajsA 412 79.96 c.67.1.1 34276 1rpxA 230 80.46 c.1.2.2 28536 3c8uA 208 80.56 2hmaA 376 80.92 1onxA 390 81.08 b.92.1.7,c.1.9.13 87176,87177 2p10A 286 81.83 2hvmA 273 82.33 c.1.8.5 28985 2pajA 492 82.73 1z15A 344 84.28 1iirA 415 84.31 c.87.1.5 62453 2qt3A 403 84.91 1yt3A 375 85.20 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 2o2xA 218 85.97 1gkpA 458 86.01 b.92.1.3,c.1.9.6 70231,70232 3cu2A 237 86.07 1j53A 186 86.09 c.55.3.5 77076 1a53 247 86.55 1ma3A 253 86.69 c.31.1.5 78883 1tltA 319 88.51 c.2.1.3,d.81.1.5 107135,107136 1phpA 394 88.82 c.86.1.1 35452 1lwjA 441 88.85 b.71.1.1,c.1.8.1 74303,74304 1korA 400 89.13 c.26.2.1,d.210.1.1 72824,72825