# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 1.78e-13 1m65A 245 3.46e-12 c.6.3.1 84847 2yxoA 267 5.89e-11 2anuA 255 2.50e-09 c.6.3.1 127058 1v77A 212 0.7232 c.6.3.2 108402 1rd5A 262 2.817 c.1.2.4 111772 2pgfA 371 3.349 2ffiA 288 3.772 c.1.9.15 133385 2gzxA 265 3.808 1w1iE 357 3.895 c.1.9.1 109051 2qulA 290 4.342 2amxA 376 4.454 c.1.9.1 127024 3c86A 328 4.538 1dorA 311 4.680 c.1.4.1 28595 2dorA 311 4.951 c.1.4.1 28593 1bf6A 291 5.030 c.1.9.3 29065 1y0eA 223 5.057 c.1.2.5 116297 2ob3A 330 5.125 1jubA 311 5.401 c.1.4.1 90908 1yixA 265 5.650 c.1.9.12 123371 3xis 387 5.782 2q02A 272 6.111 1a4mA 349 6.265 c.1.9.1 29014 1vc4A 254 6.760 c.1.2.4 100557 1vzwA 244 6.776 c.1.2.1 120553 2vhlA 396 6.872 1o0yA 260 6.963 c.1.10.1 80756 1qopA 268 6.974 c.1.2.4 28570 2fliA 220 7.199 c.1.2.2 133714 1xwyA 264 7.474 c.1.9.12 122411 1o12A 376 7.888 b.92.1.5,c.1.9.10 80758,80759 2v3gA 283 8.313 2gwnA 452 8.533 1v5xA 203 8.874 c.1.2.4 100377 1yxyA 234 8.997 c.1.2.5 124203 1muwA 386 9.752 c.1.15.3 79495 2f6kA 307 10.22 c.1.9.15 133047 1g0cA 364 10.81 c.1.8.3 60165 1k77A 260 11.36 c.1.15.5 72096 2eg6A 347 12.10 4xis 387 12.61 2vc7A 314 13.27 2egzA 219 13.49 2dztA 248 14.26 2citA 282 14.88 c.1.8.3 130499 2q09A 416 15.41 2d2jA 329 16.73 c.1.9.3 131175 1qtwA 285 18.12 c.1.15.1 29392 1v93A 296 18.19 c.1.23.1 100532 1yx1A 264 19.97 c.1.15.7 124169 1v0lA 313 20.47 c.1.8.3 108207 1fkx 349 21.12 2qv5A 261 21.45 2ekcA 262 22.11 2ftwA 521 22.68 b.92.1.3,c.1.9.6 134083,134084 1b5tA 275 22.82 c.1.23.1 29676 1vbjA 281 23.19 1a53A 247 23.44 c.1.2.4 28564 1vflA 356 24.10 c.1.9.1 120041 3cjpA 272 24.61 1h5yA 253 25.18 c.1.2.1 65638 1w8sA 263 25.35 c.1.10.1 120744 2bv9A 290 25.74 c.1.8.3 129242 1hw6A 278 25.74 c.1.7.1 61296 1lwjA 441 27.92 b.71.1.1,c.1.8.1 74303,74304 2qahA 303 27.98 1n82A 331 28.30 c.1.8.3 91703 1usgA 346 28.46 c.93.1.1 99864 1nq6A 302 29.18 c.1.8.3 92046 1eqcA 394 30.58 c.1.8.3 28811 2p10A 286 31.13 2nlyA 245 31.58 c.6.2.7 138364 1n7kA 234 31.70 c.1.10.1 85374 2nqlA 388 31.77 2qw5A 335 33.49 2icsA 379 33.95 b.92.1.8,c.1.9.14 137241,137242 2nxfA 322 33.98 2bp1A 360 34.65 1pz1A 333 35.09 c.1.7.1 95390 2ho4A 259 35.10 1yc5A 246 35.19 c.31.1.5 122910 1ur3M 319 35.38 c.1.7.1 99806 1i1wA 303 35.65 c.1.8.3 76732 1us0A 316 36.13 c.1.7.1 99850 1j54A 186 36.21 c.55.3.5 77077 2hx1A 284 36.45 1igs 248 36.81 1vbuA 328 37.03 c.1.8.3 119963 2agkA 260 37.72 1zzmA 259 38.41 c.1.9.12 125911 1i0dA 332 38.56 c.1.9.3 61487 1w0mA 226 38.69 c.1.1.1 109027 1ojxA 263 39.74 c.1.10.1 93164 3b5vA 248 40.09 1h1yA 228 41.38 c.1.2.2 76506 2j6vA 301 42.22 1zp4A 304 42.26 1vp8A 201 42.28 c.49.1.2 113947 2yr1A 257 42.74 1xi3A 215 42.85 c.1.3.1 109601 3cnyA 301 43.45 3c8nA 356 44.41 1kfcA 268 44.74 c.1.2.4 77371 1xrtA 467 45.31 b.92.1.3,c.1.9.6 122258,122259 1z6gA 218 45.37 1g8mA 593 45.40 c.24.1.3,c.97.1.4 60371,60372 2jc5A 259 45.64 1zsxA 347 46.47 1zgdA 312 46.49 1a53 247 46.69 1j2rA 199 46.90 c.33.1.3 90788 1vh7A 265 47.01 c.1.2.1 100646 1rpxA 230 47.42 c.1.2.2 28536 2ojpA 292 47.51 1f07A 321 47.59 c.1.16.3 59560 1a0cA 438 48.63 c.1.15.3 29529 1nal1 297 49.15 2yxbA 161 49.73 2gokA 429 50.59 2bgsA 344 51.28 2agtA 319 52.17 1qwgA 251 52.74 c.1.27.1 96473 1s1pA 331 54.89 c.1.7.1 98350 2cksA 306 55.00 2bneA 241 55.43 c.73.1.3 128824 1gveA 327 56.07 c.1.7.1 70597 1mzhA 225 56.49 c.1.10.1 79698 2a0nA 265 57.57 c.1.2.1 125961 1w85A 368 57.88 c.36.1.11 114335 1j6oA 268 58.29 c.1.9.12 77088 1pyfA 312 59.19 c.1.7.1 95334 1w7lA 422 60.26 c.67.1.1 109226 3buvA 326 61.21 2hk0A 309 61.42 1geqA 248 61.47 c.1.2.4 28589 1nf8A 207 61.60 c.33.1.3 85630 1jq5A 370 62.11 e.22.1.2 67084 1ma3A 253 62.99 c.31.1.5 78883 2dvtA 327 64.18 c.1.9.15 131793 2gcuA 245 64.59 2liv 344 65.04 1qisA 396 68.37 c.67.1.1 34284 2b81A 323 68.63 1q7zA 566 68.68 c.1.21.2,c.1.26.1 96090,96091 2dskA 311 69.43 1nf9A 207 69.83 c.33.1.3 85631 8abpA 306 69.85 c.93.1.1 35647 2j13A 247 70.62 c.6.2.3 137934 3c6qA 311 71.31 2akoA 251 71.66 c.73.1.3 126923 1tv8A 340 71.73 c.1.28.3 107352 2g0wA 296 72.31 c.1.15.4 134503 1vi2A 300 72.45 c.2.1.7,c.58.1.5 100726,100727 1ny1A 240 73.02 c.6.2.3 86395 1frb 315 73.82 2iw0A 254 74.08 c.6.2.3 137737 1akoA 268 74.69 d.151.1.1 41779 1ajsA 412 75.08 c.67.1.1 34276 2p97A 201 75.70 2gwgA 350 76.79 c.1.9.15 135805 1sfjA 238 76.93 c.1.10.1 112075 1lucB 324 77.06 c.1.16.1 29548 1x92A 199 78.10 c.80.1.3 114976 2hejA 323 79.22 2i7gA 376 80.09 1j53A 186 80.10 c.55.3.5 77076 1w8gA 234 80.16 2pr7A 137 80.78 1ho1A 242 81.05 c.1.24.1 61097 2csuA 457 81.13 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1vk4A 298 81.66 c.72.1.1 100850 1wstA 417 81.83 c.67.1.1 121244 3c6cA 316 82.47 3bofA 566 82.56 2a1fA 247 84.63 c.73.1.3 125991 2p0oA 372 85.10 1j31A 262 85.49 d.160.1.2 90808 2himA 358 85.88 1zuaX 317 86.68 1ybdA 239 86.97 c.73.1.3 122884 1ads 315 88.24 1ujpA 271 89.01 c.1.2.4 99462 1j79A 347 89.11 c.1.9.4 62675 2g3fA 421 89.80 1thfD 253 89.82 c.1.2.1 28535