# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 1.02e-13 1m65A 245 5.06e-13 c.6.3.1 84847 2yxoA 267 1.46e-11 2anuA 255 9.83e-10 c.6.3.1 127058 1v77A 212 0.3449 c.6.3.2 108402 2qulA 290 1.038 2q02A 272 1.866 1vbjA 281 2.063 2vhlA 396 3.202 2qahA 303 3.304 1k77A 260 3.690 c.1.15.5 72096 1yixA 265 4.690 c.1.9.12 123371 1zgdA 312 4.817 1us0A 316 4.819 c.1.7.1 99850 1hw6A 278 6.117 c.1.7.1 61296 2gzxA 265 6.147 2ffiA 288 6.205 c.1.9.15 133385 2gwnA 452 6.399 4xis 387 6.543 1o12A 376 6.637 b.92.1.5,c.1.9.10 80758,80759 3xis 387 7.243 1s1pA 331 7.676 c.1.7.1 98350 2amxA 376 7.743 c.1.9.1 127024 2fliA 220 7.994 c.1.2.2 133714 2f6kA 307 8.020 c.1.9.15 133047 2hejA 323 8.254 1frb 315 9.125 2ob3A 330 9.134 1bf6A 291 10.67 c.1.9.3 29065 1vzwA 244 12.26 c.1.2.1 120553 1muwA 386 12.52 c.1.15.3 79495 1h5yA 253 12.61 c.1.2.1 65638 1rd5A 262 13.09 c.1.2.4 111772 2a0nA 265 13.26 c.1.2.1 125961 3c86A 328 13.32 2pg3A 232 13.40 3cnyA 301 13.87 2agtA 319 13.96 1ads 315 13.96 2hk0A 309 14.16 2pgfA 371 14.47 1qtwA 285 14.72 c.1.15.1 29392 3c6qA 311 14.80 1xwyA 264 15.17 c.1.9.12 122411 2g0wA 296 15.28 c.1.15.4 134503 1j96A 323 16.08 c.1.7.1 71616 1yx1A 264 16.29 c.1.15.7 124169 1a0dA 440 16.67 c.1.15.3 29533 2eg6A 347 16.96 1vc4A 254 17.27 c.1.2.4 100557 1qopA 268 17.43 c.1.2.4 28570 1mi3A 322 17.63 c.1.7.1 91274 1onwA 390 17.70 b.92.1.7,c.1.9.13 87172,87173 1zuaX 317 19.11 1ur3M 319 19.15 c.1.7.1 99806 1xrtA 467 19.17 b.92.1.3,c.1.9.6 122258,122259 1a0cA 438 19.32 c.1.15.3 29529 1tv8A 340 19.96 c.1.28.3 107352 1dorA 311 21.04 c.1.4.1 28595 2nlyA 245 21.89 c.6.2.7 138364 1yxyA 234 22.06 c.1.2.5 124203 1yrrA 382 22.61 b.92.1.5,c.1.9.10 123935,123936 1y0eA 223 23.34 c.1.2.5 116297 2bgsA 344 23.99 1vflA 356 24.08 c.1.9.1 120041 1kcxA 518 24.64 b.92.1.3,c.1.9.6 90953,90954 2ao0A 324 24.93 1w1iE 357 25.02 c.1.9.1 109051 1qwgA 251 25.44 c.1.27.1 96473 1o0yA 260 25.45 c.1.10.1 80756 1q6oA 216 25.73 c.1.2.3 95986 2v3gA 283 26.22 1cb0A 283 26.88 c.56.2.1 33790 1zzmA 259 27.30 c.1.9.12 125911 1fkx 349 27.57 2qs8A 418 28.03 2qv5A 261 28.30 1yacA 208 28.56 c.33.1.3 31757 1pyfA 312 28.95 c.1.7.1 95334 2d2jA 329 29.13 c.1.9.3 131175 1pz1A 333 29.50 c.1.7.1 95390 1i60A 278 30.52 c.1.15.4 71118 1vh7A 265 31.43 c.1.2.1 100646 2ftwA 521 32.91 b.92.1.3,c.1.9.6 134083,134084 1xp3A 307 33.36 c.1.15.1 122210 2vesA 299 33.87 2bneA 241 34.08 c.73.1.3 128824 1g0cA 364 34.54 c.1.8.3 60165 2a1fA 247 35.27 c.73.1.3 125991 1qwkA 317 35.44 c.1.7.1 96482 1ybdA 239 36.03 c.73.1.3 122884 1a53A 247 36.16 c.1.2.4 28564 1rpxA 230 36.97 c.1.2.2 28536 1tqjA 230 37.30 c.1.2.2 107228 1h1yA 228 37.80 c.1.2.2 76506 2akoA 251 37.93 c.73.1.3 126923 1ynpA 317 38.49 1jubA 311 39.11 c.1.4.1 90908 1igs 248 39.97 2dztA 248 40.79 2qw5A 335 41.18 2hx1A 284 41.66 2gokA 429 42.03 1i0dA 332 42.20 c.1.9.3 61487 1xi3A 215 43.36 c.1.3.1 109601 1zsxA 347 43.58 2nqlA 388 45.83 2j13A 247 46.06 c.6.2.3 137934 1yc5A 246 46.98 c.31.1.5 122910 1a4mA 349 47.11 c.1.9.1 29014 2qvcA 313 48.81 2yx0A 342 49.79 2hvmA 273 54.81 c.1.8.5 28985 1v4vA 376 57.39 c.87.1.3 100313 1w8sA 263 57.56 c.1.10.1 120744 1j54A 186 58.17 c.55.3.5 77077 2bp1A 360 58.94 1tjyA 316 59.21 c.93.1.1 107062 2b81A 323 59.24 1exbA 332 59.79 c.1.7.1 28666 1gkpA 458 60.32 b.92.1.3,c.1.9.6 70231,70232 1hrkA 359 60.87 c.92.1.1 61228 2d59A 144 62.16 c.2.1.8 131266 2p10A 286 62.28 1f75A 249 62.78 c.101.1.1 59662 3ciwA 348 63.07 2gouA 365 63.82 1wr8A 231 64.25 c.108.1.10 114836 1v5xA 203 64.53 c.1.2.4 100377 2j6vA 301 64.89 2icsA 379 64.91 b.92.1.8,c.1.9.14 137241,137242 3canA 182 66.81 1xngA 268 67.11 c.26.2.1 122186 2h3hA 313 67.33 1gudA 288 67.42 c.93.1.1 83326 1q1gA 276 68.14 c.56.2.1 95574 1usgA 346 68.47 c.93.1.1 99864 2ohwA 133 68.77 2b34A 199 68.91 2uy2A 294 69.52 2ekcA 262 71.15 2ac7A 235 71.41 c.56.2.1 126543 2dorA 311 72.50 c.1.4.1 28593 1lwjA 441 72.67 b.71.1.1,c.1.8.1 74303,74304 1w7lA 422 72.71 c.67.1.1 109226 1m32A 366 72.98 c.67.1.3 78508 1odkA 235 73.04 c.56.2.1 86863 1xbyA 216 73.26 c.1.2.3 121846 1thfD 253 73.85 c.1.2.1 28535 1nf9A 207 73.87 c.33.1.3 85631 1b5tA 275 74.10 c.1.23.1 29676 1gkrA 458 76.58 b.92.1.3,c.1.9.6 70251,70252 2avxA 171 76.85 2citA 282 78.69 c.1.8.3 130499 1fxxA 482 78.84 c.55.3.5 33726 1nf8A 207 79.54 c.33.1.3 85630 1ma3A 253 79.71 c.31.1.5 78883 1v93A 296 80.25 c.1.23.1 100532 2vc7A 314 81.20 1a53 247 81.64 2ojpA 292 81.96 3cu2A 237 82.61 1jvsA 400 84.74 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 2dvtA 327 86.14 c.1.9.15 131793 2iw0A 254 86.43 c.6.2.3 137737 1jkxA 212 86.45 c.65.1.1 66813 2g3fA 421 86.81 1j2rA 199 87.06 c.33.1.3 90788