# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 6.46e-12 1m65A 245 1.03e-10 c.6.3.1 84847 2yxoA 267 1.11e-09 2anuA 255 3.51e-08 c.6.3.1 127058 1v77A 212 0.9613 c.6.3.2 108402 2qulA 290 2.044 1kcxA 518 3.748 b.92.1.3,c.1.9.6 90953,90954 2q02A 272 4.611 3c86A 328 4.654 1xrtA 467 5.051 b.92.1.3,c.1.9.6 122258,122259 1vbjA 281 5.481 2ffiA 288 6.719 c.1.9.15 133385 1frb 315 7.366 2gwnA 452 7.513 2f6kA 307 7.585 c.1.9.15 133047 2vhlA 396 7.780 1s1pA 331 8.355 c.1.7.1 98350 2qahA 303 8.746 2ftwA 521 9.446 b.92.1.3,c.1.9.6 134083,134084 1yixA 265 9.577 c.1.9.12 123371 2gzxA 265 9.802 1qtwA 285 10.44 c.1.15.1 29392 1k77A 260 10.45 c.1.15.5 72096 1hw6A 278 10.64 c.1.7.1 61296 4xis 387 10.66 2d2jA 329 10.99 c.1.9.3 131175 1ur3M 319 11.22 c.1.7.1 99806 2pgfA 371 11.28 2ob3A 330 11.52 1mi3A 322 12.09 c.1.7.1 91274 1o12A 376 12.55 b.92.1.5,c.1.9.10 80758,80759 1vl2A 421 12.72 c.26.2.1,d.210.1.1 108708,108709 1us0A 316 12.97 c.1.7.1 99850 1xwyA 264 13.72 c.1.9.12 122411 1zzmA 259 14.13 c.1.9.12 125911 1pz1A 333 15.04 c.1.7.1 95390 1qwgA 251 15.19 c.1.27.1 96473 2amxA 376 15.28 c.1.9.1 127024 2fliA 220 15.90 c.1.2.2 133714 1bf6A 291 18.39 c.1.9.3 29065 1yx1A 264 18.54 c.1.15.7 124169 2g0wA 296 18.96 c.1.15.4 134503 1zgdA 312 19.03 1o0yA 260 19.72 c.1.10.1 80756 1ynpA 317 20.54 1muwA 386 20.66 c.1.15.3 79495 1exbA 332 21.25 c.1.7.1 28666 1lqaA 346 22.85 c.1.7.1 84674 1pyfA 312 23.15 c.1.7.1 95334 3c6qA 311 23.46 1vzwA 244 24.22 c.1.2.1 120553 1phpA 394 24.30 c.86.1.1 35452 2pg3A 232 25.36 1lwjA 441 25.85 b.71.1.1,c.1.8.1 74303,74304 1ht6A 405 25.99 b.71.1.1,c.1.8.1 83629,83630 1h5yA 253 26.10 c.1.2.1 65638 1dorA 311 27.36 c.1.4.1 28595 2qw5A 335 27.36 1rd5A 262 28.39 c.1.2.4 111772 3xis 387 28.72 1yrrA 382 28.92 b.92.1.5,c.1.9.10 123935,123936 2ojpA 292 29.57 1zuaX 317 29.96 2bgsA 344 30.84 1cb0A 283 31.09 c.56.2.1 33790 1usgA 346 31.20 c.93.1.1 99864 2gokA 429 32.46 1qopA 268 32.51 c.1.2.4 28570 1zsxA 347 32.64 2icsA 379 33.83 b.92.1.8,c.1.9.14 137241,137242 2g3fA 421 34.13 1i60A 278 34.50 c.1.15.4 71118 1qwkA 317 34.85 c.1.7.1 96482 2qs8A 418 35.22 2qv5A 261 37.95 1yxyA 234 38.53 c.1.2.5 124203 2agtA 319 38.97 1zaiA 363 39.92 c.1.10.1 124828 2p9bA 458 40.22 1q7zA 566 40.22 c.1.21.2,c.1.26.1 96090,96091 1v93A 296 40.25 c.1.23.1 100532 1vc4A 254 40.36 c.1.2.4 100557 2hk0A 309 40.95 1ads 315 40.98 2ao0A 324 41.02 1j96A 323 41.75 c.1.7.1 71616 1wzlA 585 42.21 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2hejA 323 42.66 1xp3A 307 43.27 c.1.15.1 122210 1n82A 331 44.78 c.1.8.3 91703 1tv8A 340 44.92 c.1.28.3 107352 2bp1A 360 45.68 1tqjA 230 45.95 c.1.2.2 107228 2ez9A 603 46.40 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1vbuA 328 46.83 c.1.8.3 119963 1q6oA 216 47.11 c.1.2.3 95986 1w1iE 357 48.09 c.1.9.1 109051 3ciwA 348 48.43 1vf8A 377 48.61 c.1.8.5,d.26.3.1 120029,120030 2nlyA 245 48.97 c.6.2.7 138364 1z15A 344 49.49 2eg6A 347 49.59 1gkrA 458 50.26 b.92.1.3,c.1.9.6 70251,70252 1a4mA 349 50.36 c.1.9.1 29014 1yacA 208 50.62 c.33.1.3 31757 1vh7A 265 50.80 c.1.2.1 100646 1xngA 268 51.09 c.26.2.1 122186 1ojxA 263 51.11 c.1.10.1 93164 2rjoA 332 52.29 1f75A 249 53.01 c.101.1.1 59662 1uasA 362 53.70 b.71.1.1,c.1.8.1 88388,88389 2vesA 299 54.42 1f6yA 262 55.12 c.1.21.2 29673 1rpxA 230 55.38 c.1.2.2 28536 1a53A 247 55.47 c.1.2.4 28564 1bjnA 360 55.59 c.67.1.4 34469 1gg4A 452 55.94 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 3cnyA 301 56.62 2puzA 419 56.74 2p0oA 372 57.08 1amy 403 57.46 2z00A 426 57.62 1fkx 349 58.13 1h1yA 228 58.72 c.1.2.2 76506 1g0cA 364 61.77 c.1.8.3 60165 1xkyA 301 64.50 c.1.10.1 122094 2citA 282 65.05 c.1.8.3 130499 1ma3A 253 65.21 c.31.1.5 78883 1n7kA 234 65.58 c.1.10.1 85374 1itcA 516 65.65 b.3.1.1,c.1.8.1 83705,83706 2liv 344 65.84 2vc7A 314 66.03 1ecpA 238 66.58 c.56.2.1 33775 1mxgA 435 69.23 b.71.1.1,c.1.8.1 85193,85194 1k92A 455 69.55 c.26.2.1,d.210.1.1 68325,68326 2dorA 311 69.71 c.1.4.1 28593 1vflA 356 71.25 c.1.9.1 120041 2j13A 247 71.39 c.6.2.3 137934 1xi3A 215 72.07 c.1.3.1 109601 1m32A 366 72.66 c.67.1.3 78508 2uy2A 294 73.15 1nbaA 264 73.65 c.33.1.3 31753 1jubA 311 73.80 c.1.4.1 90908 2gwgA 350 74.22 c.1.9.15 135805 1nhp 447 74.23 1ni5A 433 75.09 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1m7xA 617 76.35 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1to3A 304 77.29 c.1.10.1 107161 1m2kA 249 78.39 c.31.1.5 84754 2qvcA 313 78.43 2pr7A 137 78.61 2akoA 251 79.45 c.73.1.3 126923 1poxA 585 80.51 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1igs 248 80.81 3b8dA 363 80.98 2du2A 374 81.38 1ctn 540 82.55 2h3hA 313 83.85 2e7fA 262 85.06 2c6qA 351 87.00 1uehA 253 87.37 c.101.1.1 99259 2i9uA 439 88.14 1v5xA 203 88.28 c.1.2.4 100377 1ybdA 239 88.37 c.73.1.3 122884 1w7lA 422 88.57 c.67.1.1 109226 3be7A 408 88.82 2a5hA 416 89.00 2p10A 286 89.30 2a1fA 247 89.50 c.73.1.3 125991 1mzhA 225 89.60 c.1.10.1 79698 2fvkA 559 89.79 b.92.1.3,c.1.9.6 134204,134205