# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 4.75e-14 1m65A 245 2.14e-13 c.6.3.1 84847 2yxoA 267 9.97e-12 2anuA 255 6.47e-10 c.6.3.1 127058 1v77A 212 0.2846 c.6.3.2 108402 2qulA 290 0.8930 1vbjA 281 1.698 2q02A 272 1.999 2vhlA 396 3.530 2qahA 303 3.550 1yixA 265 4.024 c.1.9.12 123371 2gzxA 265 4.245 4xis 387 4.450 2ffiA 288 4.640 c.1.9.15 133385 2f6kA 307 5.017 c.1.9.15 133047 1zgdA 312 5.072 2gwnA 452 5.080 1hw6A 278 5.572 c.1.7.1 61296 2ob3A 330 6.018 1us0A 316 6.034 c.1.7.1 99850 3xis 387 6.268 1k77A 260 6.460 c.1.15.5 72096 2amxA 376 6.511 c.1.9.1 127024 1s1pA 331 7.241 c.1.7.1 98350 1bf6A 291 8.179 c.1.9.3 29065 2hejA 323 9.054 2fliA 220 9.097 c.1.2.2 133714 1o12A 376 9.232 b.92.1.5,c.1.9.10 80758,80759 3c86A 328 9.318 2pg3A 232 9.585 2eg6A 347 10.22 1vzwA 244 10.80 c.1.2.1 120553 1xwyA 264 10.91 c.1.9.12 122411 3c6qA 311 11.35 1muwA 386 11.62 c.1.15.3 79495 2g0wA 296 11.87 c.1.15.4 134503 1a0dA 440 11.95 c.1.15.3 29533 1frb 315 12.22 1tv8A 340 12.37 c.1.28.3 107352 1onwA 390 13.16 b.92.1.7,c.1.9.13 87172,87173 1rd5A 262 13.42 c.1.2.4 111772 2pgfA 371 13.46 2v3gA 283 13.96 1ur3M 319 14.05 c.1.7.1 99806 1a0cA 438 14.36 c.1.15.3 29529 1h5yA 253 14.50 c.1.2.1 65638 1j96A 323 14.69 c.1.7.1 71616 1qopA 268 14.71 c.1.2.4 28570 2agtA 319 14.76 2hk0A 309 15.09 2a0nA 265 15.43 c.1.2.1 125961 1mi3A 322 15.64 c.1.7.1 91274 3cnyA 301 16.80 1ads 315 16.81 1yxyA 234 18.25 c.1.2.5 124203 2bgsA 344 18.31 1o0yA 260 18.62 c.1.10.1 80756 1vc4A 254 18.90 c.1.2.4 100557 1xrtA 467 19.02 b.92.1.3,c.1.9.6 122258,122259 1yacA 208 19.38 c.33.1.3 31757 1dorA 311 20.44 c.1.4.1 28595 1qtwA 285 20.59 c.1.15.1 29392 2d2jA 329 20.87 c.1.9.3 131175 1y0eA 223 22.59 c.1.2.5 116297 1zuaX 317 22.89 2nlyA 245 22.90 c.6.2.7 138364 1w1iE 357 23.06 c.1.9.1 109051 1zzmA 259 23.40 c.1.9.12 125911 2ftwA 521 23.43 b.92.1.3,c.1.9.6 134083,134084 2qs8A 418 24.93 1fkx 349 24.98 1vflA 356 25.70 c.1.9.1 120041 1yx1A 264 26.85 c.1.15.7 124169 2ao0A 324 27.26 2a1fA 247 30.65 c.73.1.3 125991 1a53A 247 30.86 c.1.2.4 28564 1yrrA 382 31.13 b.92.1.5,c.1.9.10 123935,123936 2qw5A 335 31.66 1pyfA 312 32.56 c.1.7.1 95334 1q6oA 216 33.09 c.1.2.3 95986 3ciwA 348 33.39 2nqlA 388 33.47 1a4mA 349 33.55 c.1.9.1 29014 2qv5A 261 33.76 1vh7A 265 34.55 c.1.2.1 100646 1rpxA 230 35.22 c.1.2.2 28536 1yc5A 246 35.22 c.31.1.5 122910 2bneA 241 35.82 c.73.1.3 128824 1pz1A 333 35.95 c.1.7.1 95390 1g0cA 364 36.01 c.1.8.3 60165 1i0dA 332 37.27 c.1.9.3 61487 1h1yA 228 37.31 c.1.2.2 76506 1zsxA 347 37.51 2icsA 379 37.54 b.92.1.8,c.1.9.14 137241,137242 1ybdA 239 37.85 c.73.1.3 122884 1qwgA 251 37.97 c.1.27.1 96473 1cb0A 283 37.99 c.56.2.1 33790 1tqjA 230 38.28 c.1.2.2 107228 1i60A 278 38.84 c.1.15.4 71118 1ynpA 317 38.91 2akoA 251 38.95 c.73.1.3 126923 1igs 248 39.53 2dztA 248 39.66 1xi3A 215 40.00 c.1.3.1 109601 2b81A 323 40.38 1qwkA 317 41.36 c.1.7.1 96482 1kcxA 518 42.04 b.92.1.3,c.1.9.6 90953,90954 1xp3A 307 43.63 c.1.15.1 122210 1jubA 311 44.88 c.1.4.1 90908 2hx1A 284 45.20 1ma3A 253 45.37 c.31.1.5 78883 1xngA 268 46.04 c.26.2.1 122186 2qvcA 313 46.25 1exbA 332 46.70 c.1.7.1 28666 2h3hA 313 48.11 2p10A 286 48.73 2j13A 247 49.35 c.6.2.3 137934 2gokA 429 50.76 2vesA 299 51.09 1usgA 346 53.17 c.93.1.1 99864 2citA 282 53.42 c.1.8.3 130499 1lwjA 441 55.53 b.71.1.1,c.1.8.1 74303,74304 1v5xA 203 55.63 c.1.2.4 100377 2vc7A 314 56.37 1m32A 366 56.79 c.67.1.3 78508 1tjyA 316 57.15 c.93.1.1 107062 1v4vA 376 58.24 c.87.1.3 100313 2bp1A 360 58.43 2dvtA 327 59.35 c.1.9.15 131793 2ekcA 262 60.71 2b34A 199 60.91 1q1gA 276 61.37 c.56.2.1 95574 1wr8A 231 61.95 c.108.1.10 114836 2hvmA 273 63.03 c.1.8.5 28985 1nf8A 207 63.12 c.33.1.3 85630 2dorA 311 63.29 c.1.4.1 28593 2gouA 365 63.47 1gudA 288 63.80 c.93.1.1 83326 2yx0A 342 64.27 1w8sA 263 65.21 c.1.10.1 120744 1j54A 186 65.30 c.55.3.5 77077 1f75A 249 66.23 c.101.1.1 59662 2ojpA 292 67.63 1bjnA 360 67.82 c.67.1.4 34469 1nf9A 207 68.24 c.33.1.3 85631 1gkpA 458 68.31 b.92.1.3,c.1.9.6 70231,70232 1m7jA 484 68.62 b.92.1.6,b.92.1.6,c.1.9.11 78732,78733,78734 1f07A 321 70.21 c.1.16.3 59560 1gkrA 458 70.24 b.92.1.3,c.1.9.6 70251,70252 2ac7A 235 71.08 c.56.2.1 126543 2d59A 144 71.25 c.2.1.8 131266 1amy 403 71.30 1m2kA 249 71.30 c.31.1.5 84754 3b5vA 248 71.46 1b5tA 275 72.13 c.1.23.1 29676 1j2rA 199 72.73 c.33.1.3 90788 1v93A 296 72.86 c.1.23.1 100532 1nbaA 264 73.14 c.33.1.3 31753 1phpA 394 75.17 c.86.1.1 35452 1w85A 368 75.43 c.36.1.11 114335 2gwgA 350 75.99 c.1.9.15 135805 2uy2A 294 76.11 1lucB 324 76.79 c.1.16.1 29548 1thfD 253 77.60 c.1.2.1 28535 2ohwA 133 78.09 2pr7A 137 78.36 1hrkA 359 78.94 c.92.1.1 61228 2j6vA 301 79.12 3canA 182 79.22 1gveA 327 79.69 c.1.7.1 70597 1ni5A 433 80.23 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2iw0A 254 81.56 c.6.2.3 137737 1odkA 235 83.73 c.56.2.1 86863 1z15A 344 84.23 1a53 247 85.44 1kfcA 268 86.80 c.1.2.4 77371 1iirA 415 86.88 c.87.1.5 62453 1j9lA 247 87.16 c.106.1.1 62762 1korA 400 87.26 c.26.2.1,d.210.1.1 72824,72825 1tqxA 227 87.43 c.1.2.2 112614 2rjoA 332 87.90 1pswA 348 88.58 c.87.1.7 88287