# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 2.89e-18 1m65A 245 2.65e-17 c.6.3.1 84847 2yxoA 267 1.23e-14 2anuA 255 6.77e-13 c.6.3.1 127058 1v77A 212 0.1252 c.6.3.2 108402 2vhlA 396 1.231 2f6kA 307 1.933 c.1.9.15 133047 2qahA 303 2.085 2qulA 290 2.268 2q02A 272 2.422 1vbjA 281 2.517 2ffiA 288 4.492 c.1.9.15 133385 2gwnA 452 4.852 1o12A 376 5.529 b.92.1.5,c.1.9.10 80758,80759 1muwA 386 6.134 c.1.15.3 79495 1dorA 311 6.886 c.1.4.1 28595 2amxA 376 6.941 c.1.9.1 127024 1bf6A 291 7.267 c.1.9.3 29065 2gzxA 265 7.351 1yixA 265 8.924 c.1.9.12 123371 3c86A 328 9.125 1o0yA 260 9.454 c.1.10.1 80756 4xis 387 9.739 1a0dA 440 10.12 c.1.15.3 29533 3buvA 326 10.46 2pgfA 371 10.68 1zgdA 312 10.82 1a0cA 438 11.03 c.1.15.3 29529 3xis 387 11.72 1yacA 208 11.81 c.33.1.3 31757 1qopA 268 11.97 c.1.2.4 28570 2hejA 323 12.58 1k77A 260 12.64 c.1.15.5 72096 2g0wA 296 12.87 c.1.15.4 134503 1vzwA 244 13.08 c.1.2.1 120553 1us0A 316 13.11 c.1.7.1 99850 3c6qA 311 13.22 2vesA 299 13.76 2a0nA 265 13.91 c.1.2.1 125961 2eg6A 347 14.61 2gokA 429 14.70 2qs8A 418 14.87 1yxyA 234 15.23 c.1.2.5 124203 2ob3A 330 15.41 2qw5A 335 15.53 1h5yA 253 16.17 c.1.2.1 65638 1yrrA 382 16.33 b.92.1.5,c.1.9.10 123935,123936 2bgsA 344 17.41 1s1pA 331 17.67 c.1.7.1 98350 1gudA 288 18.62 c.93.1.1 83326 1w1iE 357 18.80 c.1.9.1 109051 1ni5A 433 19.17 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1y0eA 223 19.38 c.1.2.5 116297 1rd5A 262 19.61 c.1.2.4 111772 1vc4A 254 20.05 c.1.2.4 100557 2icsA 379 21.07 b.92.1.8,c.1.9.14 137241,137242 1hw6A 278 21.12 c.1.7.1 61296 2b34A 199 21.26 1tv8A 340 21.85 c.1.28.3 107352 2ftwA 521 22.20 b.92.1.3,c.1.9.6 134083,134084 1jubA 311 23.33 c.1.4.1 90908 2nlyA 245 23.50 c.6.2.7 138364 2fliA 220 23.70 c.1.2.2 133714 1qtwA 285 24.42 c.1.15.1 29392 1frb 315 24.47 1ads 315 24.75 1xwyA 264 25.26 c.1.9.12 122411 1xngA 268 25.89 c.26.2.1 122186 1j96A 323 25.94 c.1.7.1 71616 2pg3A 232 27.84 3cnyA 301 28.03 1a4mA 349 28.19 c.1.9.1 29014 2hvmA 273 28.72 c.1.8.5 28985 1bjnA 360 28.82 c.67.1.4 34469 2v3gA 283 29.75 2agtA 319 29.98 1amy 403 31.13 1nbaA 264 32.07 c.33.1.3 31753 3bijA 285 33.21 1fkx 349 33.51 2dorA 311 34.48 c.1.4.1 28593 1vflA 356 34.72 c.1.9.1 120041 1mxgA 435 35.26 b.71.1.1,c.1.8.1 85193,85194 2h3hA 313 36.29 1igs 248 37.18 1yt3A 375 38.76 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 1kcxA 518 38.84 b.92.1.3,c.1.9.6 90953,90954 1m32A 366 38.92 c.67.1.3 78508 1zuaX 317 39.31 1jq5A 370 40.76 e.22.1.2 67084 1fxxA 482 40.78 c.55.3.5 33726 1v4vA 376 41.55 c.87.1.3 100313 1usgA 346 41.76 c.93.1.1 99864 7taa 478 42.47 2bneA 241 44.41 c.73.1.3 128824 2j13A 247 44.76 c.6.2.3 137934 1mi3A 322 45.00 c.1.7.1 91274 2a1fA 247 45.31 c.73.1.3 125991 2ao0A 324 45.64 2dztA 248 47.02 2d2jA 329 47.58 c.1.9.3 131175 2gwgA 350 48.22 c.1.9.15 135805 1j54A 186 50.21 c.55.3.5 77077 1kq3A 376 50.37 e.22.1.2 68790 1f75A 249 51.18 c.101.1.1 59662 1hrkA 359 51.94 c.92.1.1 61228 2qv5A 261 52.84 2bp1A 360 53.12 2hk0A 309 53.68 1lwjA 441 54.09 b.71.1.1,c.1.8.1 74303,74304 1qwgA 251 54.23 c.1.27.1 96473 1wr8A 231 54.33 c.108.1.10 114836 1vh7A 265 54.36 c.1.2.1 100646 2liv 344 54.93 2rjoA 332 56.03 1kqzA 273 56.47 c.1.8.5 68844 1ur3M 319 59.17 c.1.7.1 99806 2h1vA 310 59.42 2gouA 365 60.16 1jvsA 400 61.69 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 2d2rA 245 61.92 1phpA 394 61.96 c.86.1.1 35452 1onwA 390 62.77 b.92.1.7,c.1.9.13 87172,87173 1w85A 368 63.02 c.36.1.11 114335 2akoA 251 63.14 c.73.1.3 126923 1nf9A 207 65.16 c.33.1.3 85631 2qvcA 313 65.33 1ybdA 239 65.64 c.73.1.3 122884 1j53A 186 65.74 c.55.3.5 77076 1mzhA 225 65.84 c.1.10.1 79698 3cjpA 272 67.30 2ohwA 133 67.72 2p10A 286 69.65 1ojxA 263 69.84 c.1.10.1 93164 1thfD 253 70.53 c.1.2.1 28535 1xrtA 467 70.71 b.92.1.3,c.1.9.6 122258,122259 2hx1A 284 70.77 2nqlA 388 71.56 1w8sA 263 71.63 c.1.10.1 120744 3ciwA 348 72.96 1eqcA 394 72.98 c.1.8.3 28811 1j2rA 199 73.46 c.33.1.3 90788 1b5tA 275 75.58 c.1.23.1 29676 1nf8A 207 76.90 c.33.1.3 85630 1m7jA 484 78.60 b.92.1.6,b.92.1.6,c.1.9.11 78732,78733,78734 3c8nA 356 79.03 2r8rA 228 79.16 2yx0A 342 80.53 1pz1A 333 80.71 c.1.7.1 95390 2uy2A 294 83.26 1cb0A 283 83.70 c.56.2.1 33790 1yx1A 264 87.48 c.1.15.7 124169 2ojpA 292 88.10