# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 2.06e-17 1m65A 245 4.05e-16 c.6.3.1 84847 2yxoA 267 1.32e-13 2anuA 255 4.24e-12 c.6.3.1 127058 1v77A 212 0.1011 c.6.3.2 108402 2qulA 290 1.343 2q02A 272 1.771 1vbjA 281 2.065 2qahA 303 2.528 2vhlA 396 2.680 1bf6A 291 2.812 c.1.9.3 29065 2f6kA 307 3.873 c.1.9.15 133047 1zgdA 312 4.795 1k77A 260 4.927 c.1.15.5 72096 2gwnA 452 5.557 1w1iE 357 5.745 c.1.9.1 109051 3xis 387 6.061 2ffiA 288 6.207 c.1.9.15 133385 2hejA 323 6.518 1us0A 316 6.732 c.1.7.1 99850 3buvA 326 6.807 1yixA 265 6.981 c.1.9.12 123371 4xis 387 7.667 1hw6A 278 8.037 c.1.7.1 61296 2gzxA 265 8.311 2pgfA 371 8.613 2bgsA 344 8.690 2amxA 376 9.180 c.1.9.1 127024 3c86A 328 9.287 1vzwA 244 10.36 c.1.2.1 120553 1h5yA 253 10.53 c.1.2.1 65638 1frb 315 11.00 2ob3A 330 11.93 2a0nA 265 12.28 c.1.2.1 125961 1muwA 386 13.37 c.1.15.3 79495 1a4mA 349 13.57 c.1.9.1 29014 1rd5A 262 13.65 c.1.2.4 111772 2qw5A 335 13.77 2vesA 299 13.91 2g0wA 296 14.64 c.1.15.4 134503 2gokA 429 14.87 1fkx 349 15.43 1tv8A 340 15.89 c.1.28.3 107352 2nlyA 245 16.04 c.6.2.7 138364 1zuaX 317 16.33 1vflA 356 16.35 c.1.9.1 120041 2fliA 220 16.74 c.1.2.2 133714 1qopA 268 17.26 c.1.2.4 28570 1yxyA 234 17.58 c.1.2.5 124203 1a0dA 440 17.89 c.1.15.3 29533 1yrrA 382 18.06 b.92.1.5,c.1.9.10 123935,123936 1ads 315 18.72 1a0cA 438 18.94 c.1.15.3 29529 2ao0A 324 19.09 1kcxA 518 19.15 b.92.1.3,c.1.9.6 90953,90954 1o0yA 260 19.17 c.1.10.1 80756 3cnyA 301 19.50 1ni5A 433 19.53 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1dorA 311 19.66 c.1.4.1 28595 1o12A 376 19.81 b.92.1.5,c.1.9.10 80758,80759 1yacA 208 20.11 c.33.1.3 31757 1vh7A 265 20.13 c.1.2.1 100646 1vc4A 254 20.48 c.1.2.4 100557 1s1pA 331 20.49 c.1.7.1 98350 2qs8A 418 20.50 1xngA 268 21.23 c.26.2.1 122186 1j96A 323 21.31 c.1.7.1 71616 2agtA 319 22.92 2ftwA 521 23.25 b.92.1.3,c.1.9.6 134083,134084 1fxxA 482 23.43 c.55.3.5 33726 2v3gA 283 23.83 1mi3A 322 23.94 c.1.7.1 91274 3ciwA 348 24.70 2qv5A 261 25.23 2d2jA 329 25.66 c.1.9.3 131175 1xwyA 264 25.80 c.1.9.12 122411 1b5tA 275 26.62 c.1.23.1 29676 2nqlA 388 28.15 1qwgA 251 29.60 c.1.27.1 96473 1igs 248 30.00 2b34A 199 30.34 1w85A 368 30.78 c.36.1.11 114335 2eg6A 347 31.27 2icsA 379 31.43 b.92.1.8,c.1.9.14 137241,137242 2hk0A 309 32.06 3c6qA 311 33.36 1j2rA 199 33.85 c.33.1.3 90788 1qtwA 285 34.41 c.1.15.1 29392 1w7lA 422 35.18 c.67.1.1 109226 1xrtA 467 36.68 b.92.1.3,c.1.9.6 122258,122259 2pg3A 232 36.94 1ur3M 319 38.17 c.1.7.1 99806 1yx1A 264 38.22 c.1.15.7 124169 1nf9A 207 39.31 c.33.1.3 85631 1phpA 394 40.03 c.86.1.1 35452 1y0eA 223 40.68 c.1.2.5 116297 1usgA 346 41.28 c.93.1.1 99864 1nf8A 207 42.21 c.33.1.3 85630 2bneA 241 42.45 c.73.1.3 128824 2j6vA 301 43.04 3c8nA 356 43.04 2ohwA 133 43.43 1yt3A 375 43.55 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 1j54A 186 45.61 c.55.3.5 77077 1i0dA 332 46.21 c.1.9.3 61487 2dorA 311 46.29 c.1.4.1 28593 1lwjA 441 46.58 b.71.1.1,c.1.8.1 74303,74304 2j13A 247 47.09 c.6.2.3 137934 1jvsA 400 47.23 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 2a1fA 247 47.29 c.73.1.3 125991 1v4vA 376 48.16 c.87.1.3 100313 1ajsA 412 50.43 c.67.1.1 34276 1amy 403 50.90 1jubA 311 51.41 c.1.4.1 90908 2dztA 248 51.55 1jq5A 370 52.22 e.22.1.2 67084 2hvmA 273 52.74 c.1.8.5 28985 1ybdA 239 53.21 c.73.1.3 122884 1hrkA 359 54.10 c.92.1.1 61228 1f75A 249 54.65 c.101.1.1 59662 1m32A 366 54.91 c.67.1.3 78508 2hx1A 284 55.54 1m7jA 484 55.68 b.92.1.6,b.92.1.6,c.1.9.11 78732,78733,78734 2akoA 251 55.74 c.73.1.3 126923 2liv 344 55.99 7taa 478 56.02 1w8sA 263 56.42 c.1.10.1 120744 1vi2A 300 56.56 c.2.1.7,c.58.1.5 100726,100727 1thfD 253 56.95 c.1.2.1 28535 1gudA 288 56.99 c.93.1.1 83326 1a53 247 57.99 2iw0A 254 58.39 c.6.2.3 137737 1gkrA 458 58.57 b.92.1.3,c.1.9.6 70251,70252 1v93A 296 59.33 c.1.23.1 100532 2vc7A 314 59.34 1gkpA 458 63.69 b.92.1.3,c.1.9.6 70231,70232 2gwgA 350 63.75 c.1.9.15 135805 2yx0A 342 64.09 1cb0A 283 67.33 c.56.2.1 33790 1pz1A 333 67.38 c.1.7.1 95390 1w0mA 226 67.94 c.1.1.1 109027 1nbaA 264 68.05 c.33.1.3 31753 2dvtA 327 70.26 c.1.9.15 131793 1kqzA 273 70.61 c.1.8.5 68844 1tvlA 454 70.63 c.1.16.4 107366 1v5xA 203 70.66 c.1.2.4 100377 1j53A 186 70.91 c.55.3.5 77076 2bp1A 360 71.87 2qt3A 403 73.10 1jf9A 408 73.45 c.67.1.3 62931 1rrmA 386 74.01 e.22.1.2 105081 2ekcA 262 75.13 2ac7A 235 75.27 c.56.2.1 126543 1wstA 417 76.12 c.67.1.1 121244 1mxgA 435 76.18 b.71.1.1,c.1.8.1 85193,85194 2q09A 416 76.58 2g3fA 421 76.94 2z9wA 392 78.67 2d2rA 245 78.76 2j4jA 226 79.02 3cjpA 272 79.78 1kq3A 376 79.88 e.22.1.2 68790 2puzA 419 80.19 1q1rA 431 80.51 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1korA 400 80.81 c.26.2.1,d.210.1.1 72824,72825 1onwA 390 81.54 b.92.1.7,c.1.9.13 87172,87173 3bijA 285 82.82 1qwkA 317 83.35 c.1.7.1 96482 3b5vA 248 84.04 2bwjA 199 85.71 2hmaA 376 85.95 1pyfA 312 85.97 c.1.7.1 95334 3b9oA 440 86.65 1a53A 247 87.01 c.1.2.4 28564 2b81A 323 89.24 1xi3A 215 89.58 c.1.3.1 109601