# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 3.04e-17 1m65A 245 1.99e-16 c.6.3.1 84847 2yxoA 267 5.46e-14 2anuA 255 2.77e-12 c.6.3.1 127058 1v77A 212 0.1192 c.6.3.2 108402 2qulA 290 1.395 2vhlA 396 2.060 2q02A 272 2.144 2f6kA 307 2.146 c.1.9.15 133047 1vbjA 281 3.087 1bf6A 291 3.267 c.1.9.3 29065 3xis 387 4.197 2ffiA 288 4.666 c.1.9.15 133385 2qahA 303 5.207 2gwnA 452 5.254 3c86A 328 5.493 4xis 387 5.632 2gzxA 265 5.863 1muwA 386 6.031 c.1.15.3 79495 2ob3A 330 6.148 2amxA 376 6.357 c.1.9.1 127024 1w1iE 357 6.460 c.1.9.1 109051 1k77A 260 7.171 c.1.15.5 72096 2pgfA 371 7.464 1yixA 265 7.603 c.1.9.12 123371 1a0dA 440 7.772 c.1.15.3 29533 2hejA 323 7.894 1zgdA 312 8.935 1h5yA 253 9.113 c.1.2.1 65638 1hw6A 278 9.810 c.1.7.1 61296 3buvA 326 10.43 1dorA 311 12.10 c.1.4.1 28595 2a0nA 265 12.78 c.1.2.1 125961 1ni5A 433 13.97 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2g0wA 296 14.03 c.1.15.4 134503 2icsA 379 14.22 b.92.1.8,c.1.9.14 137241,137242 1yxyA 234 14.34 c.1.2.5 124203 2d2jA 329 14.34 c.1.9.3 131175 2qs8A 418 14.53 2fliA 220 14.78 c.1.2.2 133714 1qopA 268 14.87 c.1.2.4 28570 1us0A 316 15.01 c.1.7.1 99850 1tv8A 340 15.12 c.1.28.3 107352 1rd5A 262 15.37 c.1.2.4 111772 1o12A 376 15.39 b.92.1.5,c.1.9.10 80758,80759 1o0yA 260 15.43 c.1.10.1 80756 1yacA 208 15.54 c.33.1.3 31757 2nlyA 245 15.77 c.6.2.7 138364 2qw5A 335 15.78 3cnyA 301 15.84 1a0cA 438 16.27 c.1.15.3 29529 1frb 315 16.41 2vesA 299 16.98 1j96A 323 17.17 c.1.7.1 71616 2ftwA 521 17.62 b.92.1.3,c.1.9.6 134083,134084 2eg6A 347 18.05 2gokA 429 19.31 1xwyA 264 19.54 c.1.9.12 122411 2v3gA 283 20.13 1vh7A 265 21.61 c.1.2.1 100646 1qtwA 285 22.11 c.1.15.1 29392 1vc4A 254 22.57 c.1.2.4 100557 1vflA 356 23.55 c.1.9.1 120041 1y0eA 223 23.63 c.1.2.5 116297 1s1pA 331 23.70 c.1.7.1 98350 3c6qA 311 23.77 2b34A 199 23.80 2dorA 311 25.00 c.1.4.1 28593 1a4mA 349 25.60 c.1.9.1 29014 1vzwA 244 25.82 c.1.2.1 120553 2nqlA 388 27.11 2qv5A 261 27.23 2pg3A 232 27.97 1fkx 349 29.49 1zuaX 317 30.19 3ciwA 348 30.31 1kcxA 518 30.84 b.92.1.3,c.1.9.6 90953,90954 1xngA 268 30.94 c.26.2.1 122186 1yrrA 382 31.75 b.92.1.5,c.1.9.10 123935,123936 2bneA 241 31.77 c.73.1.3 128824 1j54A 186 31.81 c.55.3.5 77077 1ads 315 32.67 1w7lA 422 32.67 c.67.1.1 109226 2a1fA 247 32.83 c.73.1.3 125991 1xrtA 467 33.38 b.92.1.3,c.1.9.6 122258,122259 1qwgA 251 33.81 c.1.27.1 96473 1yt3A 375 33.98 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 1phpA 394 34.74 c.86.1.1 35452 1igs 248 35.18 2bgsA 344 36.31 1j2rA 199 38.41 c.33.1.3 90788 2dztA 248 39.25 2agtA 319 40.02 1i0dA 332 40.07 c.1.9.3 61487 2akoA 251 40.25 c.73.1.3 126923 2ohwA 133 40.30 2ao0A 324 40.75 1m7jA 484 41.61 b.92.1.6,b.92.1.6,c.1.9.11 78732,78733,78734 1gudA 288 42.49 c.93.1.1 83326 1hrkA 359 43.60 c.92.1.1 61228 1ybdA 239 44.88 c.73.1.3 122884 1f75A 249 45.11 c.101.1.1 59662 2j13A 247 45.59 c.6.2.3 137934 1v4vA 376 47.05 c.87.1.3 100313 2gwgA 350 47.20 c.1.9.15 135805 1nf9A 207 48.29 c.33.1.3 85631 1cb0A 283 49.11 c.56.2.1 33790 1fxxA 482 50.11 c.55.3.5 33726 1nf8A 207 50.16 c.33.1.3 85630 2d59A 144 50.80 c.2.1.8 131266 1mxgA 435 51.29 b.71.1.1,c.1.8.1 85193,85194 1yx1A 264 51.65 c.1.15.7 124169 2hk0A 309 54.54 1mi3A 322 54.90 c.1.7.1 91274 2vc7A 314 55.27 1korA 400 55.46 c.26.2.1,d.210.1.1 72824,72825 1vi2A 300 55.52 c.2.1.7,c.58.1.5 100726,100727 1jubA 311 55.72 c.1.4.1 90908 2citA 282 56.50 c.1.8.3 130499 1lwjA 441 57.57 b.71.1.1,c.1.8.1 74303,74304 2hvmA 273 57.68 c.1.8.5 28985 1pz1A 333 59.92 c.1.7.1 95390 2iw0A 254 60.08 c.6.2.3 137737 1j53A 186 60.17 c.55.3.5 77076 3bijA 285 60.18 2gt1A 326 60.63 2liv 344 60.66 1b5tA 275 61.20 c.1.23.1 29676 1jvsA 400 63.22 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1tjyA 316 63.23 c.93.1.1 107062 1amy 403 63.77 3cjpA 272 63.80 2hx1A 284 63.82 1thfD 253 64.30 c.1.2.1 28535 1w85A 368 65.49 c.36.1.11 114335 1v93A 296 66.79 c.1.23.1 100532 1ur3M 319 66.83 c.1.7.1 99806 1usgA 346 66.96 c.93.1.1 99864 1jq5A 370 67.94 e.22.1.2 67084 2puzA 419 67.94 1a53 247 68.92 1nbaA 264 69.11 c.33.1.3 31753 1q1rA 431 69.24 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2g3fA 421 69.82 1rrmA 386 71.34 e.22.1.2 105081 2v8pA 271 71.44 1gkrA 458 72.98 b.92.1.3,c.1.9.6 70251,70252 1z15A 344 74.47 2gouA 365 75.66 2fv7A 331 76.18 c.72.1.1 134197 1m32A 366 76.76 c.67.1.3 78508 1w23A 360 77.45 c.67.1.4 114088 1lucB 324 77.70 c.1.16.1 29548 2h3hA 313 79.73 1wr8A 231 80.94 c.108.1.10 114836 2z9wA 392 81.66 1ojxA 263 82.52 c.1.10.1 93164 1w8sA 263 83.01 c.1.10.1 120744 1vk4A 298 84.92 c.72.1.1 100850 1w0mA 226 85.93 c.1.1.1 109027 2guiA 194 86.53 c.55.3.5 135737 2bp1A 360 86.93 1yc5A 246 87.12 c.31.1.5 122910 1jf9A 408 87.14 c.67.1.3 62931 3be7A 408 88.64 2o2xA 218 88.96