# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 1.74e-12 1m65A 245 2.52e-11 c.6.3.1 84847 2yxoA 267 2.68e-10 2anuA 255 4.50e-08 c.6.3.1 127058 2ffiA 288 0.4851 c.1.9.15 133385 2qahA 303 0.8251 1v77A 212 0.9799 c.6.3.2 108402 2eg6A 347 1.764 2f6kA 307 2.542 c.1.9.15 133047 1a4mA 349 2.909 c.1.9.1 29014 1y0eA 223 2.930 c.1.2.5 116297 2q02A 272 3.479 2gzxA 265 3.966 1w1iE 357 4.496 c.1.9.1 109051 1vc4A 254 5.229 c.1.2.4 100557 1yxyA 234 5.277 c.1.2.5 124203 1fkx 349 5.439 3xis 387 5.925 1h5yA 253 5.964 c.1.2.1 65638 3c86A 328 7.988 1eqcA 394 8.297 c.1.8.3 28811 2ob3A 330 8.779 1dorA 311 9.500 c.1.4.1 28595 2amxA 376 9.870 c.1.9.1 127024 3cjpA 272 10.08 2vc7A 314 10.13 2a0nA 265 10.14 c.1.2.1 125961 1vzwA 244 10.37 c.1.2.1 120553 1qwgA 251 10.48 c.1.27.1 96473 1yixA 265 11.11 c.1.9.12 123371 1jubA 311 11.23 c.1.4.1 90908 1o12A 376 11.36 b.92.1.5,c.1.9.10 80758,80759 2dorA 311 11.70 c.1.4.1 28593 1vflA 356 11.85 c.1.9.1 120041 1bf6A 291 11.95 c.1.9.3 29065 2pgfA 371 12.04 1lwjA 441 12.76 b.71.1.1,c.1.8.1 74303,74304 1vh7A 265 12.99 c.1.2.1 100646 1muwA 386 13.05 c.1.15.3 79495 1thfD 253 14.04 c.1.2.1 28535 1k77A 260 14.05 c.1.15.5 72096 1xwyA 264 14.24 c.1.9.12 122411 2d2jA 329 15.09 c.1.9.3 131175 2egzA 219 15.43 1rd5A 262 16.68 c.1.2.4 111772 1qopA 268 17.04 c.1.2.4 28570 2agkA 260 17.05 2z26A 347 18.43 1v0lA 313 18.63 c.1.8.3 108207 4xis 387 19.43 1xrtA 467 20.60 b.92.1.3,c.1.9.6 122258,122259 2dvtA 327 20.86 c.1.9.15 131793 1vbuA 328 21.00 c.1.8.3 119963 1n7kA 234 22.01 c.1.10.1 85374 3b5vA 248 22.75 2v3gA 283 23.01 1yc5A 246 24.39 c.31.1.5 122910 1w8sA 263 26.57 c.1.10.1 120744 2citA 282 26.82 c.1.8.3 130499 2qulA 290 27.25 2vhlA 396 27.76 1j79A 347 27.87 c.1.9.4 62675 2bv9A 290 28.08 c.1.8.3 129242 2p10A 286 28.42 1a53A 247 29.30 c.1.2.4 28564 1s8eA 333 30.29 d.159.1.4 105368 1gkpA 458 30.51 b.92.1.3,c.1.9.6 70231,70232 1ma3A 253 31.00 c.31.1.5 78883 1ni5A 433 31.62 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2ftwA 521 31.67 b.92.1.3,c.1.9.6 134083,134084 1igs 248 32.34 1hdoA 206 32.95 c.2.1.2 60965 2r8rA 228 33.15 1q7zA 566 33.33 c.1.21.2,c.1.26.1 96090,96091 2nqlA 388 33.94 1a0cA 438 35.77 c.1.15.3 29529 1mzhA 225 35.91 c.1.10.1 79698 1h1nA 305 36.73 c.1.8.3 70855 2ojpA 292 37.05 2q09A 416 38.37 1b5tA 275 38.77 c.1.23.1 29676 2dxnA 274 39.99 1m2kA 249 40.75 c.31.1.5 84754 1o0yA 260 40.77 c.1.10.1 80756 1v5xA 203 41.48 c.1.2.4 100377 2ehhA 294 41.49 1n82A 331 41.84 c.1.8.3 91703 2b4yA 271 43.41 c.31.1.5 127868 1v93A 296 44.28 c.1.23.1 100532 2gwnA 452 44.44 1kcxA 518 44.72 b.92.1.3,c.1.9.6 90953,90954 2qw5A 335 44.73 2rfgA 297 45.40 2cksA 306 46.09 2fliA 220 46.49 c.1.2.2 133714 2bp1A 360 47.69 1vbjA 281 49.60 1g0cA 364 50.66 c.1.8.3 60165 2j13A 247 50.88 c.6.2.3 137934 2qv5A 261 50.94 1ra0A 430 51.04 b.92.1.2,c.1.9.5 111756,111757 1nq6A 302 52.20 c.1.8.3 92046 1nal1 297 52.58 1a53 247 52.99 2gwgA 350 53.18 c.1.9.15 135805 1tk9A 188 53.35 c.80.1.3 107082 2ho4A 259 54.31 2dztA 248 55.00 1xdwA 331 55.00 1w0mA 226 56.13 c.1.1.1 109027 1uok 558 56.21 3buvA 326 57.22 2gokA 429 57.41 2nlyA 245 57.64 c.6.2.7 138364 3c8nA 356 57.76 1i1wA 303 57.92 c.1.8.3 76732 2aioA 269 58.59 d.157.1.1 126829 1gveA 327 59.33 c.1.7.1 70597 1ojxA 263 59.41 c.1.10.1 93164 1zbqA 327 60.13 c.2.1.2 124862 1xkyA 301 60.55 c.1.10.1 122094 2pc8A 400 60.65 1ceo 343 60.90 1pwxA 254 61.65 c.2.1.2 95262 1vp8A 201 63.51 c.49.1.2 113947 1lqaA 346 64.95 c.1.7.1 84674 1aj2A 282 66.12 c.1.21.1 29665 1x92A 199 66.49 c.80.1.3 114976 1z15A 344 66.55 2yr1A 257 66.92 1exbA 332 68.20 c.1.7.1 28666 1xngA 268 70.15 c.26.2.1 122186 2i2wA 212 70.99 3bofA 566 72.48 1ho1A 242 72.63 c.1.24.1 61097 2atsA 292 72.77 c.1.10.1 127306 1j6oA 268 74.08 c.1.9.12 77088 2dskA 311 74.71 2h1qA 270 76.79 2hk0A 309 79.06 1vimA 200 79.58 c.80.1.3 100758 1ynpA 317 80.53 1ur3M 319 81.24 c.1.7.1 99806 1i4nA 251 81.77 c.1.2.4 71114 1onxA 390 82.74 b.92.1.7,c.1.9.13 87176,87177 2yvaA 196 83.40 1h4pA 408 84.03 c.1.8.3 90617 3cbwA 353 84.19 2uy2A 294 85.46 1f6dA 376 86.28 c.87.1.3 35467 1m5wA 243 86.45 c.1.24.1 84836 1vi2A 300 86.58 c.2.1.7,c.58.1.5 100726,100727 2hvmA 273 86.76 c.1.8.5 28985 1i0dA 332 87.03 c.1.9.3 61487 2hejA 323 87.97 1j6pA 418 88.23 b.92.1.4,c.1.9.9 77089,77090 2q8uA 336 88.47 1kqzA 273 88.60 c.1.8.5 68844 1k6wA 426 89.23 b.92.1.2,c.1.9.5 68236,68237