# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 2.44e-13 1m65A 245 5.11e-12 c.6.3.1 84847 2yxoA 267 8.39e-11 2anuA 255 2.34e-08 c.6.3.1 127058 1v77A 212 0.5082 c.6.3.2 108402 2qahA 303 1.975 2q02A 272 2.608 2amxA 376 2.684 c.1.9.1 127024 2ffiA 288 2.742 c.1.9.15 133385 2qulA 290 3.826 1vzwA 244 4.906 c.1.2.1 120553 1o0yA 260 5.095 c.1.10.1 80756 1vc4A 254 5.275 c.1.2.4 100557 1y0eA 223 5.417 c.1.2.5 116297 2pgfA 371 5.436 3xis 387 5.602 1yixA 265 6.052 c.1.9.12 123371 2gzxA 265 6.235 2f6kA 307 6.809 c.1.9.15 133047 2eg6A 347 6.886 1qopA 268 7.033 c.1.2.4 28570 1h5yA 253 7.513 c.1.2.1 65638 1a4mA 349 7.629 c.1.9.1 29014 1o12A 376 8.135 b.92.1.5,c.1.9.10 80758,80759 1xwyA 264 8.339 c.1.9.12 122411 2p10A 286 9.071 2ob3A 330 9.610 3c86A 328 9.718 4xis 387 10.29 1muwA 386 11.52 c.1.15.3 79495 2d2jA 329 11.57 c.1.9.3 131175 1vflA 356 12.00 c.1.9.1 120041 1ni5A 433 12.10 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1qwgA 251 13.14 c.1.27.1 96473 2qs8A 418 13.18 2a0nA 265 13.21 c.1.2.1 125961 2dvtA 327 13.85 c.1.9.15 131793 2vc7A 314 14.06 1ra0A 430 15.46 b.92.1.2,c.1.9.5 111756,111757 2q09A 416 15.92 1vbjA 281 16.25 1vh7A 265 16.41 c.1.2.1 100646 1k77A 260 17.14 c.1.15.5 72096 1thfD 253 18.13 c.1.2.1 28535 1dorA 311 18.24 c.1.4.1 28595 2hejA 323 18.78 1nnsA 326 19.07 c.88.1.1 85910 1lwjA 441 19.37 b.71.1.1,c.1.8.1 74303,74304 3buvA 326 19.80 1igs 248 20.19 1w8sA 263 20.57 c.1.10.1 120744 1w1iE 357 21.27 c.1.9.1 109051 1xkyA 301 22.37 c.1.10.1 122094 1rd5A 262 23.34 c.1.2.4 111772 2g0wA 296 23.65 c.1.15.4 134503 2r8rA 228 23.97 2qv5A 261 24.28 1w0mA 226 24.36 c.1.1.1 109027 2gwnA 452 25.02 1xrtA 467 25.03 b.92.1.3,c.1.9.6 122258,122259 3cjpA 272 25.19 1a53A 247 25.65 c.1.2.4 28564 1k6wA 426 26.50 b.92.1.2,c.1.9.5 68236,68237 1jubA 311 26.73 c.1.4.1 90908 1n7kA 234 27.01 c.1.10.1 85374 1v93A 296 27.02 c.1.23.1 100532 2dorA 311 27.55 c.1.4.1 28593 1yxyA 234 28.20 c.1.2.5 124203 1v0lA 313 29.01 c.1.8.3 108207 1ur3M 319 29.52 c.1.7.1 99806 1rpxA 230 29.63 c.1.2.2 28536 2fliA 220 29.87 c.1.2.2 133714 2nlyA 245 31.39 c.6.2.7 138364 1q7zA 566 31.70 c.1.21.2,c.1.26.1 96090,96091 2g3fA 421 31.73 1vbuA 328 32.14 c.1.8.3 119963 1us0A 316 33.01 c.1.7.1 99850 3chvA 284 33.17 1gkpA 458 34.09 b.92.1.3,c.1.9.6 70231,70232 1a0cA 438 35.83 c.1.15.3 29529 1vimA 200 37.19 c.80.1.3 100758 1bf6A 291 38.05 c.1.9.3 29065 2agkA 260 38.15 2uy2A 294 38.98 2r8wA 332 39.09 1exbA 332 39.30 c.1.7.1 28666 1fkx 349 39.52 1h1yA 228 39.77 c.1.2.2 76506 2vhlA 396 40.20 1mzhA 225 41.14 c.1.10.1 79698 2gokA 429 41.21 2liv 344 41.84 2v3gA 283 42.08 1nal1 297 42.91 2rfgA 297 44.04 1hw6A 278 44.73 c.1.7.1 61296 2ehhA 294 44.99 1lqaA 346 45.61 c.1.7.1 84674 2i5gA 325 45.61 1uok 558 45.92 1b5tA 275 45.98 c.1.23.1 29676 2ftwA 521 46.92 b.92.1.3,c.1.9.6 134083,134084 1nbaA 264 47.58 c.33.1.3 31753 1n82A 331 47.75 c.1.8.3 91703 2ojpA 292 48.41 1zuaX 317 49.03 1v5xA 203 49.11 c.1.2.4 100377 2atsA 292 49.16 c.1.10.1 127306 2oodA 475 49.85 1j31A 262 50.34 d.160.1.2 90808 1a53 247 50.64 3b5vA 248 50.93 1ads 315 51.44 1j96A 323 52.13 c.1.7.1 71616 1eqcA 394 52.39 c.1.8.3 28811 1e8cA 498 54.89 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2agtA 319 55.54 1yx1A 264 56.80 c.1.15.7 124169 1zosA 230 56.99 7taa 478 57.27 1yc5A 246 58.35 c.31.1.5 122910 1usgA 346 59.63 c.93.1.1 99864 3cnyA 301 59.72 1ma3A 253 59.85 c.31.1.5 78883 3c8nA 356 59.97 2dztA 248 62.08 1onxA 390 62.22 b.92.1.7,c.1.9.13 87176,87177 2bp1A 360 62.43 1uasA 362 63.33 b.71.1.1,c.1.8.1 88388,88389 2v9dA 343 63.40 1onwA 390 63.98 b.92.1.7,c.1.9.13 87172,87173 2himA 358 63.98 2qvcA 313 65.10 1z15A 344 65.40 1s1pA 331 68.04 c.1.7.1 98350 2cftA 298 68.24 2hvmA 273 68.30 c.1.8.5 28985 1hl2A 297 68.43 c.1.10.1 83581 1nq6A 302 68.62 c.1.8.3 92046 3c6qA 311 68.80 1hdoA 206 69.57 c.2.1.2 60965 2q8uA 336 69.65 2i57A 438 69.75 2r91A 286 71.16 1m2kA 249 71.26 c.31.1.5 84754 1zgdA 312 71.72 1qnrA 344 72.27 c.1.8.3 28834 1uuqA 440 72.96 c.1.8.3 100015 2oktA 342 73.60 1tb3A 352 74.18 c.1.4.1 119205 2i9uA 439 74.35 1o2dA 371 75.87 e.22.1.2 86591 1ynpA 317 76.04 3c9fA 557 76.26 2c6qA 351 77.14 1w85A 368 77.23 c.36.1.11 114335 2dxnA 274 77.36 2egzA 219 77.43 2nqlA 388 77.87 1bqcA 302 78.09 c.1.8.3 28831 1i1wA 303 78.10 c.1.8.3 76732 2z26A 347 78.54 1kqzA 273 78.72 c.1.8.5 68844 2oycA 306 79.26 2a6lA 292 79.33 c.1.10.1 126285 1qisA 396 79.63 c.67.1.1 34284 2a6nA 292 79.76 c.1.10.1 126289 2iw0A 254 79.83 c.6.2.3 137737 1rh9A 373 80.05 c.1.8.3 118773 2cksA 306 80.30 2gcuA 245 80.44 1jq5A 370 81.60 e.22.1.2 67084 3ciwA 348 81.67 1f6dA 376 81.79 c.87.1.3 35467 1pyfA 312 82.72 c.1.7.1 95334 1ctn 540 82.73 1qwkA 317 83.44 c.1.7.1 96482 1gg4A 452 83.89 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1v4vA 376 84.48 c.87.1.3 100313 2hqbA 296 84.94 1ojxA 263 84.94 c.1.10.1 93164 2bgsA 344 85.02 2csuA 457 85.94 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1tqjA 230 86.40 c.1.2.2 107228 2imrA 420 87.09 2dtxA 264 89.43