# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 7.94e-05 2yxoA 267 0.000161 1m65A 245 0.000210 c.6.3.1 84847 2anuA 255 0.001935 c.6.3.1 127058 2amxA 376 2.610 c.1.9.1 127024 1vemA 516 2.622 b.3.1.1,c.1.8.1 120021,120022 1itcA 516 3.490 b.3.1.1,c.1.8.1 83705,83706 3c86A 328 4.195 3cjpA 272 4.348 2pgfA 371 4.503 2a1fA 247 7.094 c.73.1.3 125991 1o12A 376 7.388 b.92.1.5,c.1.9.10 80758,80759 1ybdA 239 7.985 c.73.1.3 122884 2bneA 241 9.519 c.73.1.3 128824 1w1iE 357 10.10 c.1.9.1 109051 1k92A 455 10.55 c.26.2.1,d.210.1.1 68325,68326 2d2jA 329 10.64 c.1.9.3 131175 1bf6A 291 10.98 c.1.9.3 29065 1lwjA 441 11.34 b.71.1.1,c.1.8.1 74303,74304 2nxfA 322 11.69 1a4mA 349 11.81 c.1.9.1 29014 1zjaA 557 12.46 1uuqA 440 13.40 c.1.8.3 100015 2vhlA 396 13.88 1xrtA 467 14.58 b.92.1.3,c.1.9.6 122258,122259 2ob3A 330 14.97 1uok 558 16.29 1nal1 297 16.33 2q02A 272 16.52 1j31A 262 16.97 d.160.1.2 90808 2i5gA 325 17.39 1yrrA 382 17.39 b.92.1.5,c.1.9.10 123935,123936 1yxyA 234 17.42 c.1.2.5 124203 1hdoA 206 18.13 c.2.1.2 60965 1rh9A 373 18.55 c.1.8.3 118773 2vc7A 314 19.45 1rqbA 539 19.55 a.5.7.2,c.1.10.5 105057,105058 2eg6A 347 19.80 2r91A 286 20.03 1n7kA 234 21.32 c.1.10.1 85374 1uf5A 303 22.36 d.160.1.2 107808 7taa 478 22.60 2q09A 416 22.69 1erzA 303 22.91 d.160.1.2 59498 3c1oA 321 23.79 1v77A 212 24.08 c.6.3.2 108402 1i0dA 332 24.62 c.1.9.3 61487 2z26A 347 25.36 2v9dA 343 25.74 1mzhA 225 25.91 c.1.10.1 79698 1w0mA 226 25.94 c.1.1.1 109027 3xis 387 25.94 2va1A 256 26.31 2nx9A 464 26.42 1nvmA 345 26.76 a.5.7.1,c.1.10.5 86249,86250 1qycA 308 27.15 c.2.1.2 96581 2r6jA 318 27.75 2qulA 290 27.77 2hmcA 344 28.21 1fmtA 314 28.72 b.46.1.1,c.65.1.1 25758,34174 1g2oA 268 29.38 c.56.2.1 60228 1rrvA 416 29.42 c.87.1.5 105083 1fkx 349 29.50 2r8wA 332 29.57 1lqaA 346 30.37 c.1.7.1 84674 1ua7A 422 30.73 b.71.1.1,c.1.8.1 107759,107760 1xi3A 215 31.01 c.1.3.1 109601 1n2eA 300 31.29 c.26.1.4 85268 1vflA 356 31.78 c.1.9.1 120041 1x13A 401 32.27 2h0rA 216 32.53 1yacA 208 33.95 c.33.1.3 31757 1mxgA 435 34.25 b.71.1.1,c.1.8.1 85193,85194 1oi7A 288 34.84 c.2.1.8,c.23.4.1 87049,87050 2gzxA 265 35.03 2blnA 305 35.06 b.46.1.1,c.65.1.1 128734,128735 1k6wA 426 35.59 b.92.1.2,c.1.9.5 68236,68237 1yx1A 264 35.85 c.1.15.7 124169 2ojpA 292 35.85 2c5aA 379 36.08 c.2.1.2 129894 1ub3A 220 36.69 c.1.10.1 88395 2atsA 292 37.15 c.1.10.1 127306 1ihoA 283 37.29 c.26.1.4 62390 1f74A 293 38.08 c.1.10.1 29079 3be7A 408 38.31 1wzlA 585 38.54 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2zdrA 349 38.61 1hl2A 297 39.28 c.1.10.1 83581 2egzA 219 39.67 1y0eA 223 40.38 c.1.2.5 116297 1ra0A 430 40.56 b.92.1.2,c.1.9.5 111756,111757 2gwgA 350 40.81 c.1.9.15 135805 1uokA 558 40.83 b.71.1.1,c.1.8.1 27801,28788 2f6kA 307 41.06 c.1.9.15 133047 2h8zA 359 42.20 1vbuA 328 43.52 c.1.8.3 119963 2bfgA 503 44.74 b.71.1.2,c.1.8.3 128423,128424 2a5hA 416 45.19 2gasA 307 45.54 2h6rA 219 45.99 2d73A 738 46.00 1uasA 362 46.54 b.71.1.1,c.1.8.1 88388,88389 1nbaA 264 46.84 c.33.1.3 31753 1j79A 347 48.93 c.1.9.4 62675 2p0oA 372 49.55 1zcoA 262 49.82 1pz1A 333 49.89 c.1.7.1 95390 1o0yA 260 50.16 c.1.10.1 80756 1vs1A 276 50.37 1ja9A 274 50.61 c.2.1.2 62817 1zq1A 438 51.35 b.38.3.1,c.88.1.1 125489,125490 1jdwA 423 51.50 d.126.1.2 41129 1o5kA 306 51.56 c.1.10.1 92504 2g3fA 421 51.70 1cb0A 283 51.79 c.56.2.1 33790 1vliA 385 52.00 b.85.1.1,c.1.10.6 108830,108831 1v0lA 313 53.74 c.1.8.3 108207 2bw0A 329 54.47 b.46.1.1,c.65.1.1 129303,129304 1ho1A 242 54.90 c.1.24.1 61097 1ug6A 431 55.18 c.1.8.4 88490 2j5vA 367 55.28 2akoA 251 55.84 c.73.1.3 126923 1qopA 268 56.48 c.1.2.4 28570 1j0hA 588 56.56 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1tv8A 340 57.01 c.1.28.3 107352 1zp4A 304 57.55 2a6nA 292 57.72 c.1.10.1 126289 2b69A 343 58.03 c.2.1.2 127974 1t2aA 375 58.38 c.2.1.2 99078 1gcoA 261 58.45 c.2.1.2 29884 2iuyA 342 58.69 2o55A 258 58.98 1vr6A 350 59.13 c.1.10.4 120439 1e43A 483 59.48 b.71.1.1,c.1.8.1 59217,59218 1kfcA 268 59.77 c.1.2.4 77371 1dhpA 292 60.01 c.1.10.1 29097 1r7aA 504 60.66 b.71.1.1,c.1.8.1 97192,97193 2vhhA 405 60.83 1ea9C 583 61.02 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2ph3A 245 62.48 2a84A 300 62.51 c.26.1.4 126389 2d1zA 436 64.25 1korA 400 64.31 c.26.2.1,d.210.1.1 72824,72825 1xuuA 349 64.73 b.85.1.1,c.1.10.6 116067,116068 1t0bA 252 65.05 c.23.16.6 106199 1tqxA 227 65.25 c.1.2.2 112614 1h1yA 228 65.27 c.1.2.2 76506 2r8rA 228 65.84 1zzmA 259 66.01 c.1.9.12 125911 1s3iA 310 66.65 b.46.1.1,c.65.1.1 98435,98436 2gokA 429 66.74 3cnyA 301 67.95 1vc4A 254 68.43 c.1.2.4 100557 1m5wA 243 68.85 c.1.24.1 84836 1geeA 261 68.98 c.2.1.2 90509 1vl2A 421 69.17 c.26.2.1,d.210.1.1 108708,108709 1yhtA 367 69.36 c.1.8.6 123213 1jdw 423 69.63 2gduA 504 69.68 b.71.1.1,c.1.8.1 135032,135033 1bli 483 69.89 1vyrA 364 71.43 c.1.4.1 108906 2abbA 364 72.48 c.1.4.1 126517 1scuA 288 73.00 c.2.1.8,c.23.4.1 30307,31135 4xis 387 73.51 1l7dA 384 73.74 c.2.1.4,c.23.12.2 77774,77775 2ffiA 288 73.97 c.1.9.15 133385 1gveA 327 74.81 c.1.7.1 70597 1z45A 699 74.82 b.30.5.4,c.2.1.2 124427,124428 1ktbA 405 75.51 b.71.1.1,c.1.8.1 72960,72961 2a6lA 292 76.77 c.1.10.1 126285 1k0iA 394 77.01 c.3.1.2,d.16.1.2 67942,67943 1gvfA 286 77.22 c.1.10.2 70599 1k6xA 352 77.49 c.2.1.2 68238 2rfgA 297 77.57 1pyfA 312 78.26 c.1.7.1 95334 1f89A 291 79.60 d.160.1.1 64988 1vzwA 244 79.79 c.1.2.1 120553 1tfrA 305 80.19 a.60.7.1,c.120.1.2 18081,33351 1qs0A 407 80.84 c.36.1.11 31829 2fb2A 340 81.45 2i2xA 461 82.03 2r00A 336 82.13 2e9lA 469 82.34 2dvtA 327 83.02 c.1.9.15 131793 2z00A 426 83.66 3cnqS 266 83.91 1xkyA 301 84.56 c.1.10.1 122094 1je0A 236 84.69 c.56.2.1 66581 1z15A 344 85.23 1b5tA 275 85.49 c.1.23.1 29676 3cgvA 397 85.77 1d7oA 297 87.22 c.2.1.2 29907 2guyA 478 87.31 b.71.1.1,c.1.8.1 135754,135755 1j96A 323 87.60 c.1.7.1 71616 1iv8A 720 87.71 b.71.1.1,c.1.8.1 76842,76843 1muwA 386 88.56 c.1.15.3 79495 1vypX 364 89.39 c.1.4.1 108905 2nuwA 288 89.57 1k7cA 233 89.82 c.23.10.4 68267