# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1y0eA	223	1.408	c.1.2.5	116297
2ifaA	208	2.471	d.90.1.1	137329
1pjjA	271	15.30	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1thfD	253	16.09	c.1.2.1	28535
1fjgK	129	16.73	c.55.4.1	33733
2calA	154	16.80		
2qorA	204	17.64		
1ihoA	283	19.08	c.26.1.4	62390
2cq2A	114	21.72	d.58.7.1	130713
1iirA	415	27.65	c.87.1.5	62453
2himA	358	27.69		
1whxA	111	27.83	d.58.7.1	114654
1ywqA	200	28.25	d.90.1.1	124162
2yv5A	302	30.39		
2nqrA	411	41.30	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
2uubK	129	42.24	c.55.4.1	139942
1khoA	370	44.54	a.124.1.1,b.12.1.3	72489,72490
2dsyA	87	45.83		
1onwA	390	46.07	b.92.1.7,c.1.9.13	87172,87173
1wexA	104	48.36	d.58.7.1	114568
1t77A	414	48.48	a.169.1.1,b.55.1.6	112290,112291
2hzfA	114	49.11		
2ywkA	95	49.87		
2e87A	357	51.55		
1xbyA	216	51.91	c.1.2.3	121846
1s50A	259	53.00	c.94.1.1	118864
1dar	691	53.56		
1ep3A	311	53.79	c.1.4.1	28597
3biyA	380	54.79		
1vh7A	265	55.90	c.1.2.1	100646
1cid	177	56.97		
1z8fA	228	61.80		
1n2eA	300	64.25	c.26.1.4	85268
2vqeK	129	71.10		
2vouA	397	71.88		
1ek4A	418	73.19	c.95.1.1,c.95.1.1	59436,59437
2yvqA	143	73.86		
1dd8A	406	74.08	c.95.1.1,c.95.1.1	35932,35933
2ad9A	119	75.55	d.58.7.1	126580
1oihA	301	77.76	b.82.2.5	93051
1h6kZ	98	78.05	d.58.7.1	60686
2q09A	416	78.12		
1x0pA	143	78.43	d.58.10.2	121552
1jz8A	1023	81.48	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	67830,67831,67832,67833,67834
2gdjA	264	85.76	c.37.1.11	135018
2cl5A	221	85.88	c.66.1.1	130570
1y08A	323	86.33	d.3.1.12	116280
1sjqA	105	86.36	d.58.7.1	105660
3pga1	337	86.77		
4pgaA	337	88.83	c.88.1.1	35565
2o5hA	136	89.45