# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ifaA	208	3.720	d.90.1.1	137329
1y0eA	223	3.954	c.1.2.5	116297
2calA	154	15.78		
1ihoA	283	16.46	c.26.1.4	62390
2cq2A	114	17.14	d.58.7.1	130713
1pjjA	271	18.14	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1fjgK	129	23.72	c.55.4.1	33733
1wexA	104	23.95	d.58.7.1	114568
2yv5A	302	30.74		
1sjqA	105	35.56	d.58.7.1	105660
1n2eA	300	38.64	c.26.1.4	85268
1ywqA	200	40.03	d.90.1.1	124162
1whxA	111	40.93	d.58.7.1	114654
1thfD	253	41.87	c.1.2.1	28535
1t77A	414	42.82	a.169.1.1,b.55.1.6	112290,112291
1khoA	370	44.69	a.124.1.1,b.12.1.3	72489,72490
2himA	358	48.84		
1iirA	415	49.58	c.87.1.5	62453
2qorA	204	50.00		
1jz8A	1023	52.97	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	67830,67831,67832,67833,67834
1dar	691	53.13		
1wisA	124	55.84	b.1.2.1	120975
2nqrA	411	58.57	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
1v8fA	276	61.25	c.26.1.4	100503
1hq0A	295	64.33	d.194.1.1	61122
2cl5A	221	67.23	c.66.1.1	130570
3biyA	380	70.13		
2uubK	129	71.77	c.55.4.1	139942
1s50A	259	72.34	c.94.1.1	118864
3begB	115	72.86		
1hzgA	295	78.89	d.194.1.1	61436
2e87A	357	80.04		
2hzfA	114	80.22		
1ek4A	418	85.98	c.95.1.1,c.95.1.1	59436,59437
1cid	177	86.47