# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1y0eA	223	2.127	c.1.2.5	116297
2ifaA	208	4.883	d.90.1.1	137329
2calA	154	4.992		
1wexA	104	9.189	d.58.7.1	114568
1whxA	111	12.08	d.58.7.1	114654
2cq2A	114	12.71	d.58.7.1	130713
1fjgK	129	18.01	c.55.4.1	33733
1sjqA	105	20.02	d.58.7.1	105660
1oihA	301	24.95	b.82.2.5	93051
1ihoA	283	29.64	c.26.1.4	62390
1onwA	390	31.64	b.92.1.7,c.1.9.13	87172,87173
1thfD	253	33.70	c.1.2.1	28535
1hq0A	295	34.47	d.194.1.1	61122
1pjjA	271	35.34	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
2cl5A	221	35.36	c.66.1.1	130570
1ogoX	574	38.22	b.133.1.1,b.80.1.10	92925,92926
1ywqA	200	38.29	d.90.1.1	124162
2uubK	129	41.94	c.55.4.1	139942
2ywkA	95	46.02		
1hzgA	295	46.68	d.194.1.1	61436
1ep3A	311	46.90	c.1.4.1	28597
2hzfA	114	48.63		
1n2eA	300	49.54	c.26.1.4	85268
2inpL	89	50.96		
2re9A	181	56.88		
2d9kA	75	58.65		
1v70A	105	59.15	b.82.1.9	113555
3begB	115	61.33		
2qwvA	208	62.79		
1a8mA	157	67.09	b.22.1.1	23868
1o58A	303	68.78	c.79.1.1	92491
1dar	691	69.66		
1iirA	415	72.58	c.87.1.5	62453
1ympA	135	74.35		
1rcy	151	75.26		
2vqeK	129	76.53		
1fjrA	195	76.70	b.102.1.1	59855
1h6kZ	98	81.56	d.58.7.1	60686
1k3xA	262	81.98	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1gky	187	83.02		
3biyA	380	84.82		
1khoA	370	85.99	a.124.1.1,b.12.1.3	72489,72490
1pexA	207	86.26	b.66.1.1	27540
1vr3A	191	89.16	b.82.1.6	120431