# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ifaA	208	2.907	d.90.1.1	137329
1y0eA	223	3.475	c.1.2.5	116297
1thfD	253	4.867	c.1.2.1	28535
2calA	154	7.284		
2qorA	204	14.71		
2himA	358	17.16		
1ywqA	200	18.21	d.90.1.1	124162
1hq0A	295	18.73	d.194.1.1	61122
1onwA	390	19.36	b.92.1.7,c.1.9.13	87172,87173
1ihoA	283	22.15	c.26.1.4	62390
1hzgA	295	24.31	d.194.1.1	61436
2hzfA	114	26.02		
1wyzA	242	27.58	c.90.1.1	121471
1vh7A	265	29.82	c.1.2.1	100646
1fjgK	129	35.28	c.55.4.1	33733
2inpL	89	39.39		
1z8fA	228	39.96		
1pjjA	271	40.45	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
2dsyA	87	41.16		
2cq2A	114	44.11	d.58.7.1	130713
2yv5A	302	45.12		
1whxA	111	45.49	d.58.7.1	114654
1sjqA	105	46.15	d.58.7.1	105660
1iirA	415	46.97	c.87.1.5	62453
2nqrA	411	47.55	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
1dar	691	48.70		
2b82A	211	48.97	c.108.1.12	128057
1jz8A	1023	53.11	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	67830,67831,67832,67833,67834
1khoA	370	53.71	a.124.1.1,b.12.1.3	72489,72490
2j41A	207	55.24		
2e87A	357	57.21		
2qptA	550	60.87		
1gycA	499	64.14	b.6.1.3,b.6.1.3,b.6.1.3	70748,70749,70750
2ad9A	119	64.89	d.58.7.1	126580
1o58A	303	66.06	c.79.1.1	92491
1d1gA	168	72.76	c.71.1.1	34889
2cl5A	221	73.21	c.66.1.1	130570
2uubK	129	73.27	c.55.4.1	139942
1n2eA	300	74.02	c.26.1.4	85268
1pexA	207	75.19	b.66.1.1	27540
1x0pA	143	75.69	d.58.10.2	121552
1xbyA	216	75.73	c.1.2.3	121846
2an9A	207	77.49	c.37.1.1	127037
2furA	209	78.90	b.45.1.1	134185
1gky	187	82.83		
1rmwA	212	83.66		
1w5tA	412	84.28	a.4.5.11,c.37.1.20	114255,114256
1ex7A	186	84.71	c.37.1.1	59537
2ftsA	419	86.98	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
4pgaA	337	87.98	c.88.1.1	35565