# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ifaA	208	4.232	d.90.1.1	137329
1vh7A	265	12.69	c.1.2.1	100646
2nqrA	411	12.93	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
1thfD	253	16.06	c.1.2.1	28535
1y0eA	223	17.44	c.1.2.5	116297
1ywqA	200	18.33	d.90.1.1	124162
2dsyA	87	21.41		
2cq2A	114	23.56	d.58.7.1	130713
2himA	358	26.19		
1iirA	415	29.15	c.87.1.5	62453
1ep3A	311	33.33	c.1.4.1	28597
2yv5A	302	36.51		
1ihoA	283	37.27	c.26.1.4	62390
1wexA	104	38.72	d.58.7.1	114568
2hzfA	114	41.60		
1n2eA	300	44.45	c.26.1.4	85268
2calA	154	46.67		
1g8lA	411	51.25	b.85.6.1,b.103.1.1,c.57.1.2	60365,60366,60367
1a5lC	566	55.48	b.92.1.1,c.1.9.2	28426,29048
1u7nA	336	56.03	c.77.1.4	107726
2re9A	181	59.42		
2qorA	204	60.14		
1pexA	207	64.19	b.66.1.1	27540
1grx	85	65.25		
3pga1	337	67.91		
2gdjA	264	71.40	c.37.1.11	135018
4pgaA	337	74.62	c.88.1.1	35565
1dorA	311	74.92	c.1.4.1	28595
1whxA	111	75.38	d.58.7.1	114654
1xbyA	216	75.48	c.1.2.3	121846
1v9jA	113	78.88	d.52.6.1	100542
2inpL	89	78.90		
2iccA	119	83.91		
2dorA	311	85.99	c.1.4.1	28593
2ad9A	119	88.45	d.58.7.1	126580