# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ifaA	208	2.688	d.90.1.1	137329
1y0eA	223	7.390	c.1.2.5	116297
1ihoA	283	14.62	c.26.1.4	62390
2calA	154	15.19		
1hq0A	295	28.50	d.194.1.1	61122
1fjgK	129	30.70	c.55.4.1	33733
1ywqA	200	36.24	d.90.1.1	124162
1n2eA	300	38.22	c.26.1.4	85268
1hzgA	295	38.84	d.194.1.1	61436
1pjjA	271	46.78	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1onwA	390	47.16	b.92.1.7,c.1.9.13	87172,87173
1wexA	104	48.51	d.58.7.1	114568
2qorA	204	62.72		
2cq2A	114	63.33	d.58.7.1	130713
2inpL	89	63.68		
2cl5A	221	65.69	c.66.1.1	130570
2gdjA	264	66.75	c.37.1.11	135018
2himA	358	68.59		
1o58A	303	73.98	c.79.1.1	92491
1thfD	253	78.48	c.1.2.1	28535
1gycA	499	79.67	b.6.1.3,b.6.1.3,b.6.1.3	70748,70749,70750
2hzfA	114	80.37		
1khoA	370	83.82	a.124.1.1,b.12.1.3	72489,72490
2dsyA	87	83.87		
2uubK	129	85.15	c.55.4.1	139942
1iirA	415	88.11	c.87.1.5	62453
2e87A	357	88.86		
1sjqA	105	89.55	d.58.7.1	105660