# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ifaA	208	2.487	d.90.1.1	137329
2nqrA	411	9.293	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
2qptA	550	13.42		
1wexA	104	13.82	d.58.7.1	114568
2cq2A	114	17.47	d.58.7.1	130713
1u94A	356	18.02	c.37.1.11,d.48.1.1	107743,107744
2himA	358	18.04		
1ywqA	200	21.90	d.90.1.1	124162
1fjcA	96	24.77	d.58.7.1	39212
1sjqA	105	25.62	d.58.7.1	105660
2gdjA	264	28.36	c.37.1.11	135018
2calA	154	29.68		
1iirA	415	29.87	c.87.1.5	62453
2qorA	204	35.28		
1h6kZ	98	50.51	d.58.7.1	60686
1thfD	253	51.68	c.1.2.1	28535
1vehA	92	53.90	d.52.8.1	113635
1wyzA	242	55.15	c.90.1.1	121471
1xbyA	216	56.08	c.1.2.3	121846
1whxA	111	56.24	d.58.7.1	114654
1kgdA	180	59.06	c.37.1.1	68582
1h6kX	97	62.78	d.58.7.1	60684
1nw2A	105	66.20	c.47.1.1	92215
2yv5A	302	70.80		
2obdA	476	73.82		
3biyA	380	74.54		
1h6vA	499	75.90	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
3begB	115	78.80		
1onwA	390	79.34	b.92.1.7,c.1.9.13	87172,87173
1v9jA	113	81.01	d.52.6.1	100542
2rebA	352	81.24	c.37.1.11,d.48.1.1	32282,38767
1iae	200	81.82		
1cid	177	82.52		
2ywkA	95	89.19		
1y0eA	223	89.72	c.1.2.5	116297