# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h2zA	306	20.64		
2ol1A	147	26.38		
1dunA	134	32.90	b.85.4.1	28371
1q5hA	147	34.29	b.85.4.1	95893
2bsyA	278	36.58	b.85.4.1,b.85.4.1	129129,129130
1sraA	151	40.99	a.39.1.3	17190
2bzyA	67	46.40		
1jjiA	311	48.68	c.69.1.2	66766
2o6pA	161	50.12		
2yz1A	120	50.38		
1x9lA	149	51.38	b.2.10.1	109528
1os8A	223	66.03	b.47.1.1	93481
2r4iA	123	67.84		
3cjlA	88	71.67		
2p22D	79	71.73		
2gysA	419	72.92	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
1b5lA	172	80.20	a.26.1.3	16900
1xm3A	264	87.33	c.1.31.1	115461