# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h2zA	306	16.33		
1hfcA	169	17.28	d.92.1.11	40335
2p9wA	334	22.10		
2gysA	419	23.34	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
1widA	130	24.24	b.142.1.2	114667
1sraA	151	32.76	a.39.1.3	17190
1x9lA	149	33.91	b.2.10.1	109528
1lvoA	302	35.33	b.47.1.4	74284
2bzyA	67	38.14		
2amdA	311	44.40		
1f42A	306	45.81	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2bsyA	278	49.25	b.85.4.1,b.85.4.1	129129,129130
2jmkA	111	54.67		
2q6fA	309	60.18		
1s68A	249	61.20	d.142.2.4	98591
1os8A	223	66.48	b.47.1.1	93481
2qkiB	188	68.49		
1mmqA	170	70.28	d.92.1.11	40396
1y7wA	291	70.98		
2vgnA	386	71.17		
3b8oA	265	74.76		
1rlrA	761	76.63	a.98.1.1,c.7.1.2	18753,30679
1ibyA	112	78.71	b.6.1.4	62233
1b5lA	172	82.37	a.26.1.3	16900
1bdo	80	82.97		
1q5hA	147	84.76	b.85.4.1	95893
3bbjA	272	87.18		
2pgbB	259	88.37