# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1sraA	151	31.06	a.39.1.3	17190
2p22D	79	39.53		
1dunA	134	48.24	b.85.4.1	28371
2ol1A	147	49.25		
1q5hA	147	52.17	b.85.4.1	95893
2o6pA	161	53.21		
2gysA	419	59.50	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
1f42A	306	60.65	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2bsyA	278	64.02	b.85.4.1,b.85.4.1	129129,129130
2vgnA	386	70.87		
1kpsB	171	73.52	a.118.12.1	68787
2jmkA	111	74.45		
1s0pA	176	74.64	a.192.1.1	98300
2nttA	217	75.56		
1x9lA	149	77.78	b.2.10.1	109528
1wyuA	438	78.47	c.67.1.7	121452
1enwA	114	79.72	a.5.4.1	16291
2fwhA	134	81.67	c.47.1.1	134242
1b5lA	172	84.39	a.26.1.3	16900
1b5l	172	84.84		
2jg0A	535	88.09		
1ly1A	181	88.45	c.37.1.1	74334