# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ol1A	147	25.72		
1sraA	151	29.55	a.39.1.3	17190
2o6pA	161	32.98		
1dunA	134	35.75	b.85.4.1	28371
2jmkA	111	37.65		
1q5hA	147	38.48	b.85.4.1	95893
2bsyA	278	45.26	b.85.4.1,b.85.4.1	129129,129130
2gysA	419	47.54	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
2nttA	217	48.63		
1wyuA	438	49.96	c.67.1.7	121452
2p22D	79	53.80		
1f42A	306	54.76	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2jg0A	535	57.57		
1enwA	114	67.64	a.5.4.1	16291
1kpsB	171	67.98	a.118.12.1	68787
1x9lA	149	68.60	b.2.10.1	109528
2fqxA	318	68.81		
1s0pA	176	69.46	a.192.1.1	98300
2vgnA	386	76.94		
1sra	151	79.92		
2j5wA	1065	80.44	b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3	138067,138068,138069,138070,138071
2bzyA	67	83.09		
2yz1A	120	86.61		
1xm3A	264	88.40	c.1.31.1	115461
2fwhA	134	89.21	c.47.1.1	134242