a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0407
- gi|150006007|ref|YP_001300751.1|_241:363 hypothetical protein BVU_3505 [Bacteroides vulgatus ATCC 8482]
- gi|149934431|gb|ABR41129.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
- gi|29347939|ref|NP_811442.1|_234:356 hypothetical protein BT_2529 [Bacteroides thetaiotaomicron VPI-5482]
- gi|29339841|gb|AAO77636.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482]

                 10        20        30        40        50        60  
                 |         |         |         |         |         |  
   1 ...RSLQGIREALDNRRTAAYFHELLIGREDLLRPFFEKCVKIEEVSRNEQGVTLSITNVTDLVL
   2 akeRSLQGIREALDNRRTAAYFHELLIGREDLLRPFFEKCVKIEEVSRNEQGVTLSITNVTDLVL
   3 akeRSPEGIREALDNRRTAVYYRELVIGREEILRPFFEKCVDIKEVKRTEKEVTFSVMNATDLVL


            70        80        90       100       110       120   
            |         |         |         |         |         |   
   1 KLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGIKGGDVNFEVTNFIVAPDKGLKYTISL
   2 KLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGIKGGDVNFEVTNFIVAPDKGLKYTISL
   3 KLKKTAHDPSLVYFREMTLKPHTQHTISVKFDNGIKGGDCNFEVTNFIVAPDKGLDYTIKL