# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1dyoA	160	8.634	b.18.1.7	23771
1dunA	134	20.24	b.85.4.1	28371
2ol1A	147	21.49		
1neuA	124	23.33	b.1.1.1	19704
1f7dA	136	30.69	b.85.4.1	28353
1hy7A	173	35.14	d.92.1.11	65957
2ggrA	76	39.47		
1b5lA	172	39.57	a.26.1.3	16900
1aipA	405	42.50	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
1qr6A	584	46.05	c.2.1.7,c.58.1.3	30293,33941
2d4yA	463	48.27		
2fikA	287	48.99	b.1.1.2,d.19.1.1	133524,133525
1qj8A	148	54.15	f.4.1.1	43744
1twfC	318	57.44	d.74.3.1,d.181.1.1	112727,112728
2p22D	79	65.63		
2fgsA	179	67.88		
1wmhA	89	72.75	d.15.2.2	114744
2jmkA	111	74.73		
1x9lA	149	74.73	b.2.10.1	109528
1zjkA	403	79.79	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1z8gA	372	80.22	b.47.1.2,d.170.1.2	124697,124698
1usuB	170	81.07	d.83.2.1	99886
2q07A	306	81.13		
2d4nA	152	81.82		
1xc3A	302	85.22	c.55.1.10,c.55.1.10	115102,115103