# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1dyoA	160	4.491	b.18.1.7	23771
2p22D	79	21.19		
2rkuA	294	23.63		
1b5lA	172	33.26	a.26.1.3	16900
1cfb	205	34.06		
1hy7A	173	40.80	d.92.1.11	65957
1twuA	139	43.59	d.32.1.8	107413
1xppA	115	48.77	d.74.3.2	115768
1cfbA	205	51.42	b.1.2.1,b.1.2.1	21991,21992
1ri5A	298	55.45	c.66.1.34	97502
3cmbA	283	56.83		
1wh0A	134	58.02	b.15.1.3	114628
1r9fA	136	58.83	d.255.1.1	97257
1eerB	227	61.27	b.1.2.1,b.1.2.1	22011,22012
1au1A	166	62.79	a.26.1.3	16889
1iujA	106	64.83	d.58.4.5	90701
1f7dA	136	64.94	b.85.4.1	28353
2ab5A	269	69.09		
1y6xA	93	70.33	a.204.1.4	122676
2jmkA	111	70.91		
1dunA	134	71.32	b.85.4.1	28371
1zjkA	403	71.86	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
2gqqA	163	72.64		
3brvB	70	74.47		
2owbA	335	75.08		
2ol1A	147	76.82		
2ft6A	124	81.09		
1f42A	306	82.09	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2bycA	137	87.30	d.58.10.2	129476