# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1dyoA 160 5.206 b.18.1.7 23771 1neuA 124 13.52 b.1.1.1 19704 2ggrA 76 23.58 2fikA 287 28.38 b.1.1.2,d.19.1.1 133524,133525 1usuB 170 28.53 d.83.2.1 99886 1qj8A 148 34.54 f.4.1.1 43744 1hy7A 173 37.52 d.92.1.11 65957 1aipA 405 43.93 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1b5lA 172 46.43 a.26.1.3 16900 1qr6A 584 46.57 c.2.1.7,c.58.1.3 30293,33941 1dunA 134 48.78 b.85.4.1 28371 2jmkA 111 50.38 1lk2A 274 56.77 b.1.1.2,d.19.1.1 91056,91057 1f7dA 136 57.70 b.85.4.1 28353 1m9zA 111 58.86 g.7.1.3 78881 2h26A 291 62.03 b.1.1.2,d.19.1.1 135990,135991 1f42A 306 62.38 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 2p22D 79 62.50 1fzoA 274 66.94 b.1.1.2,d.19.1.1 60155,60156 1a1oA 276 71.09 b.1.1.2,d.19.1.1 20751,38265 2ol1A 147 71.19 1xc3A 302 71.27 c.55.1.10,c.55.1.10 115102,115103 2p54A 267 71.45 a.123.1.1 139497 1wmhA 89 72.59 d.15.2.2 114744 1a1nA 276 73.83 b.1.1.2,d.19.1.1 20755,38267 1i4fA 275 74.77 b.1.1.2,d.19.1.1 61687,61688 1k5nA 276 76.63 b.1.1.2,d.19.1.1 77266,77267 1sraA 151 82.00 a.39.1.3 17190 3fruA 269 84.40 b.1.1.2,d.19.1.1 20657,38150 1eerB 227 84.65 b.1.2.1,b.1.2.1 22011,22012 2p9wA 334 86.23 2gufA 594 87.72 f.4.3.3 135736 1kjvA 284 88.43 b.1.1.2,d.19.1.1 77421,77422