# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1dyoA	160	6.508	b.18.1.7	23771
1neuA	124	13.35	b.1.1.1	19704
2ggrA	76	20.19		
2fikA	287	27.31	b.1.1.2,d.19.1.1	133524,133525
1b5lA	172	27.37	a.26.1.3	16900
1dunA	134	34.56	b.85.4.1	28371
2rkuA	294	34.62		
1hy7A	173	37.59	d.92.1.11	65957
1au1A	166	38.64	a.26.1.3	16889
2ol1A	147	38.70		
1f7dA	136	46.44	b.85.4.1	28353
1qj8A	148	49.86	f.4.1.1	43744
2h26A	291	52.74	b.1.1.2,d.19.1.1	135990,135991
1wmhA	89	56.06	d.15.2.2	114744
2vgpA	284	59.61		
2p22D	79	64.33		
1v87A	114	66.64	g.44.1.1	108422
1y1nA	291	67.17		
2fgsA	179	69.93		
1usuB	170	76.20	d.83.2.1	99886
1aipA	405	77.18	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
1qr6A	584	78.87	c.2.1.7,c.58.1.3	30293,33941
2jmkA	111	81.25		
1m9zA	111	87.46	g.7.1.3	78881
1x9lA	149	88.49	b.2.10.1	109528