# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1m65A 245 7.74e-17 c.6.3.1 84847 2anuA 255 2.73e-16 c.6.3.1 127058 2yxoA 267 1.23e-14 2hnhA 910 1.55e-07 1vflA 356 0.1721 c.1.9.1 120041 1fkx 349 0.2218 1w1iE 357 0.3060 c.1.9.1 109051 2rduA 387 0.5583 1a4mA 349 1.003 c.1.9.1 29014 2pgfA 371 1.029 2nzlA 392 1.254 2du2A 374 1.713 1ceoA 343 1.989 c.1.8.3 28808 2amxA 376 3.096 c.1.9.1 127024 2qw5A 335 6.241 1h5vA 304 11.02 c.1.8.3 70898 1i60A 278 11.96 c.1.15.4 71118 2obnA 349 13.89 1tv8A 340 14.11 c.1.28.3 107352 3ciwA 348 14.49 2o55A 258 14.86 3d0cA 314 16.10 2qulA 290 16.43 1qwgA 251 17.07 c.1.27.1 96473 1ltdA 506 17.57 c.1.4.1,d.120.1.1 28618,41086 2g0wA 296 17.78 c.1.15.4 134503 2d13A 227 18.43 c.26.2.1 131121 1ojxA 263 19.40 c.1.10.1 93164 1gkpA 458 20.68 b.92.1.3,c.1.9.6 70231,70232 1o12A 376 20.75 b.92.1.5,c.1.9.10 80758,80759 1xhcA 367 21.77 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1eceA 358 21.87 c.1.8.3 28813 2bhuA 602 22.36 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 3be7A 408 23.13 3b40A 417 24.04 1w8sA 263 24.31 c.1.10.1 120744 1bh6A 274 27.69 c.41.1.1 32487 2o14A 375 31.61 7a3hA 303 31.72 c.1.8.3 28817 1ccwA 137 32.35 c.23.6.1 31238 1k6wA 426 34.08 b.92.1.2,c.1.9.5 68236,68237 2z00A 426 34.80 2pa6A 427 35.41 2yxbA 161 35.84 1zgdA 312 36.01 2pz0A 252 37.62 1edgA 380 38.36 c.1.8.3 28807 2nlyA 245 38.80 c.6.2.7 138364 1hw6A 278 39.21 c.1.7.1 61296 2fb2A 340 39.68 1ceo 343 40.01 2ggtA 164 41.20 c.47.1.10 135156 2i5gA 325 41.25 2fymA 431 41.29 c.1.11.1,d.54.1.1 134379,134380 1b8gA 429 44.08 c.67.1.4 34499 1z85A 234 44.56 2pyxA 526 46.01 2dfaA 250 49.91 c.6.2.5 131469 1dbiA 280 50.34 c.41.1.1 32543 1gciA 269 50.87 c.41.1.1 32503 1ic6A 279 50.92 c.41.1.1 62257 1zq6A 359 52.46 2vhhA 405 52.58 1pnsC 206 53.41 i.1.1.1 88170 2ohwA 133 56.31 1gs5A 258 56.40 c.73.1.2 70395 1xuuA 349 56.42 b.85.1.1,c.1.10.6 116067,116068 2h9aB 310 56.64 1h5yA 253 56.80 c.1.2.1 65638 1ra0A 430 58.34 b.92.1.2,c.1.9.5 111756,111757 2ptzA 432 58.69 1zkpA 268 59.00 d.157.1.9 125205 1xi3A 215 59.32 c.1.3.1 109601 2nliA 368 60.11 2i7gA 376 60.12 1p1mA 406 60.22 b.92.1.4,c.1.9.9 87696,87697 1jb9A 316 60.43 b.43.4.2,c.25.1.1 62840,62841 2al2A 436 64.04 c.1.11.1,d.54.1.1 126953,126954 1ionA 243 64.89 c.37.1.10 62633 2pg3A 232 68.48 1g0cA 364 69.30 c.1.8.3 60165 3b79A 129 69.45 1gr0A 367 69.81 c.2.1.3,d.81.1.3 70379,70380 1wruA 379 70.39 2al1A 436 70.44 c.1.11.1,d.54.1.1 126949,126950 2id0A 644 71.61 1geqA 248 73.03 c.1.2.4 28589 2r8wA 332 73.70 1rd5A 262 73.74 c.1.2.4 111772 1ep3A 311 73.83 c.1.4.1 28597 1m5wA 243 76.42 c.1.24.1 84836 2e7yA 280 76.57 2o0rA 411 76.69 1vd6A 224 76.98 c.1.18.3 119991 2i6uA 307 78.03 1fjgC 239 78.64 d.52.3.1,d.53.1.1 38831,38839 1iyxA 432 78.65 c.1.11.1,d.54.1.1 83815,83816 1goxA 369 78.87 c.1.4.1 28607 2q02A 272 79.05 2egzA 219 83.60 2dy0A 190 84.10 1nhp 447 84.77 1sh7A 284 84.92 1d2fA 390 85.40 c.67.1.3 34411 1thmA 279 86.36 c.41.1.1 32544 4ubpC 570 86.39 b.92.1.1,c.1.9.2 28431,29053 1h1nA 305 88.66 c.1.8.3 70855 2ehhA 294 88.74 1npdA 288 88.77 c.2.1.7,c.58.1.5 80681,80682