# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1m65A 245 2.09e-17 c.6.3.1 84847 2anuA 255 4.04e-17 c.6.3.1 127058 2yxoA 267 3.69e-15 2hnhA 910 4.90e-08 1vflA 356 0.2187 c.1.9.1 120041 2rduA 387 0.2640 1fkx 349 0.4504 2nzlA 392 0.6275 1w1iE 357 0.7041 c.1.9.1 109051 2du2A 374 2.701 2pgfA 371 2.966 1a4mA 349 3.013 c.1.9.1 29014 2amxA 376 4.049 c.1.9.1 127024 1ceoA 343 5.789 c.1.8.3 28808 2qw5A 335 13.47 2qulA 290 13.52 2o55A 258 14.67 1xhcA 367 16.11 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1h5vA 304 20.75 c.1.8.3 70898 1ojxA 263 20.84 c.1.10.1 93164 1wruA 379 21.33 3be7A 408 23.58 2px7A 236 24.58 1h5yA 253 26.21 c.1.2.1 65638 1tv8A 340 26.35 c.1.28.3 107352 3d0cA 314 26.42 1acmA 310 26.99 c.78.1.1,c.78.1.1 35180,35181 2o14A 375 27.18 1ekxA 311 27.48 c.78.1.1,c.78.1.1 35088,35089 3b40A 417 27.55 1qwgA 251 27.59 c.1.27.1 96473 2fymA 431 28.75 c.1.11.1,d.54.1.1 134379,134380 2g0wA 296 32.72 c.1.15.4 134503 1ny1A 240 33.07 c.6.2.3 86395 3ciwA 348 34.13 1i60A 278 34.52 c.1.15.4 71118 1bh6A 274 35.23 c.41.1.1 32487 1zgdA 312 36.07 8atcA 310 36.52 c.78.1.1,c.78.1.1 35132,35133 1w8sA 263 36.53 c.1.10.1 120744 3csuA 310 39.70 c.78.1.1,c.78.1.1 35094,35095 3b79A 129 41.77 2obnA 349 43.53 1pnsC 206 43.61 i.1.1.1 88170 1erzA 303 45.20 d.160.1.2 59498 1fl2A 310 47.83 c.3.1.5,c.3.1.5 59869,59870 3grsA 478 47.83 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1gkpA 458 48.34 b.92.1.3,c.1.9.6 70231,70232 2ggtA 164 49.58 c.47.1.10 135156 7a3hA 303 51.65 c.1.8.3 28817 2cc0A 195 52.07 c.6.2.3 130209 1goxA 369 54.05 c.1.4.1 28607 1geqA 248 57.08 c.1.2.4 28589 2nlyA 245 57.68 c.6.2.7 138364 2dfaA 250 58.53 c.6.2.5 131469 3cgvA 397 58.70 2akzA 439 58.84 c.1.11.1,d.54.1.1 126944,126945 1fjgC 239 59.76 d.52.3.1,d.53.1.1 38831,38839 2fb2A 340 61.14 2i5gA 325 61.21 2ragA 417 61.80 2iw0A 254 65.45 c.6.2.3 137737 1vd6A 224 66.18 c.1.18.3 119991 2yxbA 161 66.39 1hw6A 278 66.82 c.1.7.1 61296 1nulA 152 67.39 c.61.1.1 34011 1vfgA 390 67.41 a.173.1.1,d.218.1.4 108570,108571 1jb9A 316 67.62 b.43.4.2,c.25.1.1 62840,62841 1ng4A 390 69.98 c.3.1.2,d.16.1.3 85666,85667 2rghA 571 70.06 1n8jA 186 71.32 c.47.1.10 85401 1ic6A 279 71.80 c.41.1.1 62257 1g0cA 364 72.64 c.1.8.3 60165 1nf3C 128 73.62 b.36.1.1 85596 1gv4A 528 73.86 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 1i52A 236 74.93 c.68.1.13 61767 1hv8A 367 75.18 c.37.1.19,c.37.1.19 32405,32406 2yv1A 294 75.21 2e7yA 280 75.47 1uf5A 303 76.63 d.160.1.2 107808 2id0A 644 78.03 2pa6A 427 78.69 2al2A 436 78.76 c.1.11.1,d.54.1.1 126953,126954 1ccwA 137 80.81 c.23.6.1 31238 1ionA 243 80.92 c.37.1.10 62633 1gciA 269 81.00 c.41.1.1 32503 1emsA 440 81.17 d.13.1.1,d.160.1.1 37520,42086 1tif 78 81.44 2d13A 227 81.52 c.26.2.1 131121 1q1rA 431 82.97 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2bhuA 602 83.18 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 1iyxA 432 83.77 c.1.11.1,d.54.1.1 83815,83816 1tb3A 352 83.89 c.1.4.1 119205 1gs5A 258 83.97 c.73.1.2 70395 1rzmA 338 84.28 c.1.10.4 105137 2al1A 436 84.62 c.1.11.1,d.54.1.1 126949,126950 2nliA 368 84.92 1edgA 380 85.97 c.1.8.3 28807 2i2wA 212 86.78 1b7eA 420 87.28 c.55.3.4 33680 2egzA 219 87.77 1gsa 316 88.87 1wa3A 205 89.43 c.1.10.1 120802 1j2rA 199 89.55 c.33.1.3 90788