# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1m65A 245 6.93e-17 c.6.3.1 84847 2anuA 255 1.73e-16 c.6.3.1 127058 2yxoA 267 9.34e-15 2hnhA 910 1.01e-07 2rduA 387 0.1747 1vflA 356 0.3298 c.1.9.1 120041 2nzlA 392 0.4980 1fkx 349 0.5381 1w1iE 357 0.8613 c.1.9.1 109051 1a4mA 349 2.995 c.1.9.1 29014 2du2A 374 3.155 2pgfA 371 4.062 1ceoA 343 4.110 c.1.8.3 28808 2amxA 376 5.024 c.1.9.1 127024 2qulA 290 8.414 2qw5A 335 13.71 2o55A 258 14.10 1xhcA 367 15.71 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1h5vA 304 16.42 c.1.8.3 70898 1ojxA 263 16.42 c.1.10.1 93164 1tv8A 340 16.91 c.1.28.3 107352 1h5yA 253 17.34 c.1.2.1 65638 3b40A 417 18.46 2obnA 349 20.94 1w8sA 263 23.92 c.1.10.1 120744 1i60A 278 25.53 c.1.15.4 71118 3d0cA 314 27.81 3ciwA 348 28.30 1qwgA 251 28.35 c.1.27.1 96473 2o14A 375 28.47 1zgdA 312 29.26 1gkpA 458 30.83 b.92.1.3,c.1.9.6 70231,70232 1bh6A 274 32.78 c.41.1.1 32487 1ekxA 311 35.19 c.78.1.1,c.78.1.1 35088,35089 3cgvA 397 36.07 1erzA 303 37.52 d.160.1.2 59498 1acmA 310 37.76 c.78.1.1,c.78.1.1 35180,35181 2fb2A 340 38.71 2g0wA 296 38.82 c.1.15.4 134503 3be7A 408 40.00 7a3hA 303 40.30 c.1.8.3 28817 2dfaA 250 40.73 c.6.2.5 131469 2px7A 236 40.98 1fl2A 310 42.64 c.3.1.5,c.3.1.5 59869,59870 1wruA 379 42.65 1goxA 369 43.71 c.1.4.1 28607 1hv8A 367 45.08 c.37.1.19,c.37.1.19 32405,32406 2akzA 439 45.19 c.1.11.1,d.54.1.1 126944,126945 8atcA 310 45.42 c.78.1.1,c.78.1.1 35132,35133 1geqA 248 46.46 c.1.2.4 28589 2fymA 431 46.50 c.1.11.1,d.54.1.1 134379,134380 2bhuA 602 47.08 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 1ng4A 390 49.43 c.3.1.2,d.16.1.3 85666,85667 2yxbA 161 50.84 1hw6A 278 51.06 c.1.7.1 61296 1pnsC 206 51.85 i.1.1.1 88170 2i5gA 325 51.98 1gv4A 528 52.12 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 1nulA 152 52.21 c.61.1.1 34011 2ragA 417 52.29 1ltdA 506 54.00 c.1.4.1,d.120.1.1 28618,41086 1ionA 243 55.70 c.37.1.10 62633 2ggtA 164 56.06 c.47.1.10 135156 3b79A 129 56.48 2nlyA 245 57.34 c.6.2.7 138364 1i52A 236 57.73 c.68.1.13 61767 1ic6A 279 60.06 c.41.1.1 62257 3csuA 310 60.18 c.78.1.1,c.78.1.1 35094,35095 1ny1A 240 60.81 c.6.2.3 86395 1ccwA 137 61.28 c.23.6.1 31238 1m5wA 243 62.15 c.1.24.1 84836 2dy0A 190 63.65 1vd6A 224 64.05 c.1.18.3 119991 3grsA 478 64.53 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1edgA 380 64.84 c.1.8.3 28807 2e7yA 280 65.72 2pa6A 427 66.43 2cc0A 195 67.91 c.6.2.3 130209 2d13A 227 68.22 c.26.2.1 131121 1tb3A 352 68.88 c.1.4.1 119205 1eceA 358 71.35 c.1.8.3 28813 1k6wA 426 72.10 b.92.1.2,c.1.9.5 68236,68237 1vl2A 421 72.14 c.26.2.1,d.210.1.1 108708,108709 1dbiA 280 72.65 c.41.1.1 32543 1g0cA 364 73.75 c.1.8.3 60165 2nliA 368 73.75 2yv1A 294 74.18 1uf5A 303 74.43 d.160.1.2 107808 1jb9A 316 75.93 b.43.4.2,c.25.1.1 62840,62841 2al2A 436 77.25 c.1.11.1,d.54.1.1 126953,126954 1j2rA 199 77.70 c.33.1.3 90788 1m6sA 347 78.22 c.67.1.1 78701 1fjgC 239 78.28 d.52.3.1,d.53.1.1 38831,38839 2rghA 571 79.11 1iyxA 432 80.17 c.1.11.1,d.54.1.1 83815,83816 1gciA 269 81.13 c.41.1.1 32503 1wa3A 205 83.35 c.1.10.1 120802 1ceo 343 83.60 1y56B 382 84.63 3ladA 476 85.36 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2al1A 436 86.19 c.1.11.1,d.54.1.1 126949,126950 1gs5A 258 86.43 c.73.1.2 70395 2iyeA 263 87.44 1rzmA 338 88.25 c.1.10.4 105137 1xuuA 349 88.92 b.85.1.1,c.1.10.6 116067,116068 1ujpA 271 89.30 c.1.2.4 99462