# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1m65A 245 4.44e-18 c.6.3.1 84847 2anuA 255 3.80e-17 c.6.3.1 127058 2yxoA 267 1.31e-15 2hnhA 910 1.18e-08 1vflA 356 0.1190 c.1.9.1 120041 2rduA 387 0.3784 1w1iE 357 0.4164 c.1.9.1 109051 1fkx 349 0.4609 2nzlA 392 0.5971 1a4mA 349 1.415 c.1.9.1 29014 2pgfA 371 1.500 2du2A 374 3.578 2amxA 376 4.013 c.1.9.1 127024 1h5vA 304 6.362 c.1.8.3 70898 1ceoA 343 9.520 c.1.8.3 28808 1zgdA 312 12.05 1acmA 310 12.47 c.78.1.1,c.78.1.1 35180,35181 1qwgA 251 13.69 c.1.27.1 96473 1tv8A 340 13.84 c.1.28.3 107352 2d13A 227 14.44 c.26.2.1 131121 2qw5A 335 14.51 1i60A 278 15.04 c.1.15.4 71118 1ltdA 506 15.06 c.1.4.1,d.120.1.1 28618,41086 2eplX 627 15.44 2i5gA 325 15.86 1ekxA 311 16.07 c.78.1.1,c.78.1.1 35088,35089 3ciwA 348 16.36 8atcA 310 16.64 c.78.1.1,c.78.1.1 35132,35133 2o55A 258 17.09 2qulA 290 18.65 1ojxA 263 19.10 c.1.10.1 93164 2yxbA 161 20.93 3b79A 129 21.01 7a3hA 303 21.60 c.1.8.3 28817 3be7A 408 22.97 3csuA 310 23.75 c.78.1.1,c.78.1.1 35094,35095 1hw6A 278 24.91 c.1.7.1 61296 3d0cA 314 25.61 1w8sA 263 27.62 c.1.10.1 120744 1wruA 379 29.44 2fymA 431 29.78 c.1.11.1,d.54.1.1 134379,134380 3b40A 417 30.97 1ccwA 137 32.55 c.23.6.1 31238 3grsA 478 33.98 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 3cgvA 397 34.40 1h5yA 253 35.52 c.1.2.1 65638 1i52A 236 36.04 c.68.1.13 61767 1ml4A 308 37.94 c.78.1.1,c.78.1.1 79255,79256 1goxA 369 38.49 c.1.4.1 28607 2fb2A 340 39.72 2rghA 571 39.95 2g0wA 296 41.40 c.1.15.4 134503 1bh6A 274 43.01 c.41.1.1 32487 2o14A 375 43.65 2dfaA 250 43.70 c.6.2.5 131469 1k6wA 426 45.07 b.92.1.2,c.1.9.5 68236,68237 1bf6A 291 45.86 c.1.9.3 29065 1zq6A 359 46.24 1hv8A 367 46.48 c.37.1.19,c.37.1.19 32405,32406 2ggtA 164 47.00 c.47.1.10 135156 2px7A 236 48.01 1ng4A 390 48.04 c.3.1.2,d.16.1.3 85666,85667 1gs5A 258 49.07 c.73.1.2 70395 1wa3A 205 49.75 c.1.10.1 120802 2pa6A 427 50.15 2bgsA 344 50.44 1geqA 248 50.75 c.1.2.4 28589 2al2A 436 50.93 c.1.11.1,d.54.1.1 126953,126954 1ny1A 240 51.77 c.6.2.3 86395 2ptzA 432 51.89 2id0A 644 51.98 2akzA 439 53.67 c.1.11.1,d.54.1.1 126944,126945 1pnsC 206 53.81 i.1.1.1 88170 2e7yA 280 54.01 1nf3C 128 56.13 b.36.1.1 85596 2ragA 417 56.41 1y56B 382 56.51 2iyeA 263 57.53 1xhcA 367 57.63 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1tvnA 293 57.82 c.1.8.3 119360 1gsa 316 58.02 1npdA 288 59.46 c.2.1.7,c.58.1.5 80681,80682 1gciA 269 59.51 c.41.1.1 32503 2agtA 319 59.64 2i2wA 212 60.13 2al1A 436 60.88 c.1.11.1,d.54.1.1 126949,126950 2h9aB 310 63.16 1xw8A 252 64.49 c.6.2.5 116111 2nlyA 245 66.64 c.6.2.7 138364 1nhsA 447 66.84 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1v77A 212 67.12 c.6.3.2 108402 2cduA 452 68.25 1vd6A 224 68.43 c.1.18.3 119991 1nulA 152 68.90 c.61.1.1 34011 1wbhA 214 68.91 c.1.10.1 120845 1hyuA 521 69.01 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1ic6A 279 69.91 c.41.1.1 62257 1gkpA 458 70.10 b.92.1.3,c.1.9.6 70231,70232 1fl2A 310 70.25 c.3.1.5,c.3.1.5 59869,59870 1zkpA 268 70.94 d.157.1.9 125205 1konA 249 71.46 e.39.1.1 72823 1vfgA 390 71.97 a.173.1.1,d.218.1.4 108570,108571 2pg3A 232 72.01 1erzA 303 72.14 d.160.1.2 59498 2ix0A 663 73.81 1vlwA 217 74.02 c.1.10.1 108868 1iyxA 432 74.04 c.1.11.1,d.54.1.1 83815,83816 1tif 78 74.34 2yv1A 294 74.78 2yw3A 207 74.97 1egzA 291 75.07 c.1.8.3 28828 1vr4A 103 75.99 d.230.5.1 120432 2z00A 426 76.07 2ohwA 133 76.39 1xuuA 349 77.67 b.85.1.1,c.1.10.6 116067,116068 1zuaX 317 77.72 2dy0A 190 78.70 1vl2A 421 78.74 c.26.2.1,d.210.1.1 108708,108709 2qkvA 96 80.43 2p3eA 420 81.09 1ryiA 382 81.81 c.3.1.2,d.16.1.3 118813,118814 1g0cA 364 82.26 c.1.8.3 60165 1xi3A 215 83.11 c.1.3.1 109601 1vbjA 281 84.64 1qauA 112 85.73 b.36.1.1 24779 1edgA 380 85.81 c.1.8.3 28807 1rd5A 262 86.30 c.1.2.4 111772 2cc0A 195 86.38 c.6.2.3 130209 1pdr 99 86.70 7odcA 424 87.02 b.49.2.3,c.1.6.1 26488,28650 1rvgA 305 87.76 c.1.10.2 97920 1pl8A 356 87.96 b.35.1.2,c.2.1.1 94878,94879 1m3sA 186 88.01 c.80.1.3 78573 2pyxA 526 88.08 2b81A 323 89.56